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Series GSE89039 Query DataSets for GSE89039
Status Public on Oct 22, 2016
Title Gene expression profiling in 8 lung cancer in Xuanwei samples
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In order to screen potential novel 'driver genes' in lung cancer in Xuanwei (LCXW), differentially expressed genes (DEGs) were detected on 8 paired LCXW and non-cancerous lung (NCL) tissues by gene expression microarrays. Statistically significantly expressed genes were identified using the mixed model analysis of variance with a false discovery rate (Benjamini-Hochberg test) adjusted p value of ≤ 0.05 and absolute fold-change values ≥ 2 or ≤ 0.5. A total of 5,129 genes were detected to be DEGs. Of these DEGs, 3,248 genes were upregulated, while another 1,881 genes were downregulated.
Overall design 8 paired LCXW and NCL tissues were tested.
Contributor(s) Zhang YL, Xue Q, Pan GQ, Tuo XY, Cai XM, Li Y, Huang T, Duan XC, Duan Y
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Submission date Oct 21, 2016
Last update date Apr 23, 2018
Contact name Yanliang Zhang
Organization name First Affiliated Hospital of Kunming Medical University
Department Department of Clinical Laboratory
Lab Yunnan Key Laboratory of Laboratory Medicine
Street address No. 295, Xichang Road
City Kunming
State/province Yunnan province
ZIP/Postal code 650032
Country China
Platforms (1)
GPL17077 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
Samples (16)
GSM2357772 110901_lung carcinoma tissue
GSM2357773 110901_non-cancerous lung tissue
GSM2357774 120401_lung carcinoma tissue
This SubSeries is part of SuperSeries:
GSE89047 Gene expression profiling and copy number alterations in 8 lung cancer in Xuanwei samples
BioProject PRJNA350001

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89039_RAW.tar 202.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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