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| Status |
Public on Oct 22, 2016 |
| Title |
Gene expression profiling in 8 lung cancer in Xuanwei samples |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
In order to screen potential novel 'driver genes' in lung cancer in Xuanwei (LCXW), differentially expressed genes (DEGs) were detected on 8 paired LCXW and non-cancerous lung (NCL) tissues by gene expression microarrays. Statistically significantly expressed genes were identified using the mixed model analysis of variance with a false discovery rate (Benjamini-Hochberg test) adjusted p value of ≤ 0.05 and absolute fold-change values ≥ 2 or ≤ 0.5. A total of 5,129 genes were detected to be DEGs. Of these DEGs, 3,248 genes were upregulated, while another 1,881 genes were downregulated.
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| |
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| Overall design |
8 paired LCXW and NCL tissues were tested.
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| |
|
| Contributor(s) |
Zhang YL, Xue Q, Pan GQ, Tuo XY, Cai XM, Li Y, Huang T, Duan XC, Duan Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 21, 2016 |
| Last update date |
Apr 23, 2018 |
| Contact name |
Yanliang Zhang |
| E-mail(s) |
zylyh2007@163.com
|
| Organization name |
First Affiliated Hospital of Kunming Medical University
|
| Department |
Department of Clinical Laboratory
|
| Lab |
Yunnan Key Laboratory of Laboratory Medicine
|
| Street address |
No. 295, Xichang Road
|
| City |
Kunming |
| State/province |
Yunnan province |
| ZIP/Postal code |
650032 |
| Country |
China |
| |
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| Platforms (1) |
| GPL17077 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version) |
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| Samples (16)
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| This SubSeries is part of SuperSeries: |
| GSE89047 |
Gene expression profiling and copy number alterations in 8 lung cancer in Xuanwei samples |
|
| Relations |
| BioProject |
PRJNA350001 |
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