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Series GSE88942 Query DataSets for GSE88942
Status Public on Oct 31, 2018
Title RNA-Seq from early time points in the kidney differentiation protocol
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The kidney differentiation protocol takes induced pluripotent stem cells through to kidney organoid via directed differentiation in approximately 25 days. Initially the cells are grown in a monolayer in a dish before being pelleted on day seven. We have performed RNA sequencing on three replicates taken at two points before cells are pelleted: day 0, when they are still iPSCs, and day 4 when cells have been exposed to growth factors and have started differentiating.
Overall design Gene expression profiling of six samples across two time points (Day 0 and Day 4)
Contributor(s) Phipson B
Citation(s) 30573816
Submission date Oct 19, 2016
Last update date May 15, 2019
Contact name Belinda Phipson
Organization name WEHI
Department Bioinformatics
Lab Phipson
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM2355664 C32_D0_1_S1
GSM2355665 C32_D0_2_S2
GSM2355666 C32_D0_3_S3
BioProject PRJNA349167
SRA SRP091776

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Supplementary file Size Download File type/resource
GSE88942_RawCounts.txt.gz 525.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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