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GEO accession:
Series GSE88915
Query DataSets for GSE88915
Status
Public on Feb 22, 2017
Title
Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples
Organism
Mus musculus
Experiment type
Non-coding RNA profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27901112
Submission date
Oct 18, 2016
Last update date
May 15, 2019
Contact name
Alan Van Goethem
Organization name
Ghent University
Street address
De Pintelaan 185
City
Ghent
ZIP/Postal code
9000
Country
Belgium
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (27)
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More...
GSM2344861
NCr Mouse 1046. TimePoint 1.tRNA dep
GSM2344862
NCr Mouse 1046. TimePoint 1.tRNA undep
GSM2344863
NCr Mouse 1047. TimePoint 1.tRNA dep
GSM2344864
NCr Mouse 1047. TimePoint 1.tRNA undep
GSM2344865
NCr Mouse 1069. TimePoint 1.tRNA dep
GSM2344866
NCr Mouse 1069. TimePoint 1.tRNA undep
GSM2344867
NCr Mouse 1046. TimePoint 2.tRNA dep
GSM2344868
NCr Mouse 1046. TimePoint 2.tRNA undep
GSM2344869
NCr Mouse 1047. TimePoint 2.tRNA dep
GSM2344870
NCr Mouse 1047. TimePoint 2.tRNA undep
GSM2344871
NCr Mouse 1069. TimePoint 2.tRNA dep
GSM2344872
NCr Mouse 1069. TimePoint 2.tRNA undep
GSM2354256
Serum_Pool_A. tRNA_dep_Beads
GSM2354257
Serum_Pool_A. tRNA_dep_RNase_H
GSM2354258
Serum_Pool_A. tRNA_dep_None
GSM2354259
Serum_Pool_B. tRNA_dep_Beads
GSM2354260
Serum_Pool_B. tRNA_dep_RNase_H
GSM2354261
Serum_Pool_B. tRNA_dep_None
GSM2354262
Serum_Pool_C. tRNA_dep_Beads
GSM2354263
Serum_Pool_C. tRNA_dep_RNase_H
GSM2354264
Serum_Pool_C. tRNA_dep_None
GSM2354265
Serum_1. Truseq
GSM2354266
Serum_2. Truseq
GSM2354267
Serum_1. TailorMix
GSM2354268
Serum_2. TailorMix
GSM2354269
Serum_1. NEBNext
GSM2354270
Serum_2. NEBNext
This SuperSeries is composed of the following SubSeries:
GSE88728
Small RNA sequencing of serum collected from mice before and after manifestation of tumor
GSE88913
Small RNA sequencing of serum-derived RNA for the evaluation of 5' tRNA halves depletion protocols
GSE88914
Evaluation of three small RNA library preparation kits on serum-derived RNA
Relations
BioProject
PRJNA349073
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE88915_RAW.tar
1.1 Mb
(http)
(custom)
TAR (of TXT)
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