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| Status |
Public on Feb 09, 2017 |
| Title |
High concordance between Illumina HiSeq2500 and NextSeq500 for Reduced Representation Bisulfite Sequencing (RRBS) |
| Organism |
Mus musculus |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Reduced representation bisulfite sequencing (RRBS) provides an efficient method for measuring DNA methylation at single base resolution in regions of high CpG density. This technique has been extensively tested on the HiSeq2500, which uses a 4-colour detection method, however it is unclear if the method will also work on the NextSeq500 platform, which employs a 2-colour detection system. We created an RRBS library and sequenced it on both the HiSeq2500 and NextSeq500, and found no significant difference in the base composition of reads derived from either machine. Moreover, the methylation calls made from the data of each instrument were highly concordant, with methylation patterns across the genome appearing as expected. Therefore, RRBS can be sequenced on the Nextseq500 with comparable quality to that of the HiSeq2500.
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| Overall design |
Examination of RRBS data produced on the HiSeq2500 and NextSeq500.
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| Contributor(s) |
Keniry A |
| Citation(s) |
27766205 |
| Submission date |
Sep 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Andrew Keniry |
| E-mail(s) |
keniry@wehi.edu.au
|
| Phone |
93452555
|
| Organization name |
The Waler and Eliza Hall Institute of Medical Research
|
| Department |
Molecular Medicine
|
| Lab |
Blewitt
|
| Street address |
1G
|
| City |
Royal Parade |
| State/province |
Victoria |
| ZIP/Postal code |
3052 |
| Country |
Australia |
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| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA343502 |
| SRA |
SRP090136 |
