|
| Status |
Public on Aug 01, 2007 |
| Title |
Regulation of the Mycobacterium tuberculosishypoxic response gene encoding alpha-crystallin |
| Organism |
Mycobacterium tuberculosis |
| Experiment type |
Expression profiling by array
|
| Summary |
Unlike many pathogens that are overtly toxic to their hosts, the primary virulence determinant of Mycobacterium tuberculosis appears to be its ability to persist for years or decades within humans in a clinically latent state. Since early in the 20th century latency has been linked to hypoxic conditions within the host, but the response of M. tuberculosis to a hypoxic signal remains poorly characterized. The M. tuberculosis alpha-crystallin (acr) gene is powerfully and rapidly induced at reduced oxygen tensions, providing us with a means to identify regulators of the hypoxic response. Using a whole genome microarray, we identified >100 genes whose expression is rapidly altered by defined hypoxic conditions. Numerous genes involved in biosynthesis and aerobic metabolism are repressed, whereas a high proportion of the induced genes have no known function. Among the induced genes is an apparent operon that includes the putative two-component response regulator pair Rv3133cy Rv3132c. When we interrupted expression of this operon by targeted disruption of the upstream gene Rv3134c, the hypoxic regulation of acr was eliminated. These results suggest a possible role for Rv3132cy3133cy3134c in mycobacterial latency.
Keywords: comparative genome hybridization design and stimulus or stress design
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| |
|
| Overall design |
Six samples were analyzed. The quality controls were biological replicate and technical replicate
|
| |
|
| Contributor(s) |
Sherman DR, Voskuil MI |
| Citation(s) |
11416222 |
| |
| Submission date |
Jul 31, 2007 |
| Last update date |
Mar 17, 2012 |
| Contact name |
SMD Staff |
| E-mail(s) |
array@genome.stanford.edu
|
| Phone |
650-498-6012
|
| URL |
http://genome-www5.stanford.edu/
|
| Organization name |
Stanford Microarray Database (SMD)
|
| Department |
Stanford University, School of Medicine
|
| Street address |
300 Pasteur Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (1) |
|
| Samples (6)
|
| GSM214098 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours |
| GSM214099 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours_rep1 |
| GSM214100 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours_rep2 |
| GSM214101 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours_rep3 |
| GSM214102 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours_rep4 |
| GSM214103 |
Shifted_from_20%_oxygen_to_0.2%_and_grew_by_2_hours_rep5 |
|
| Relations |
| BioProject |
PRJNA101823 |
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