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Series GSE86154 Query DataSets for GSE86154
Status Public on Aug 29, 2016
Title O-GlcNAc Aminidase is an RNA Pol II Elongation Factor Coupled to Pausing Factors SPT5 and TIF1b
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq shows that OGA and O-GlcNAc are found at promoters/TSS concomitantly with the known elongation factors SPT5 and TIF1b as well as RNA pol II. There are gene body overlaps of various combinations of factors as well.
Overall design ChIP-seq of the indicated factors from the human BJAB B-cell line
Contributor(s) Lewis B, Kim B
Citation(s) 27601472
Submission date Aug 28, 2016
Last update date Aug 07, 2019
Contact name Brian Andrew Lewis
Phone 301-435-8323
Fax 301-496-9956
Organization name National Cancer Institute-NIH
Department metabolism Branch
Lab Lewis Lab
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (7)
GSM2295947 PolII_ChIPSeq
GSM2295948 SPT5_ChIPSeq
GSM2295949 TRIM28_ChIPSeq
BioProject PRJNA340372
SRA SRP083139

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86154_RAW.tar 3.9 Gb (http)(custom) TAR (of BEDGRAPH, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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