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Series GSE84697 Query DataSets for GSE84697
Status Public on Oct 17, 2016
Title Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant mRNA signatures
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Tumor-infiltrating macrophages, NK cells, CD8+ and CD4+ T cells sorted from clear cell renal cell carcinoma patient specimens.
Overall design 4 macrophage samples (CD45+CD3-CD56-CD14+), 2 CD16+ NK cell samples (CD45+CD3-CD56+CD16+), 5 CD8+ T cell samples (CD45+CD3+CD8+), 3 CD4+ T cell samples (CD45+CD3+CD4+), and one non-immune cell sample (CD45-).
Contributor(s) Şenbabaoğlu Y, Gejman RS, Winer AG, Liu M, Cheng EH, Scheinberg DA, Li MO, Hsieh JJ, Hakimi AA
Citation(s) 27855702
Submission date Jul 21, 2016
Last update date May 15, 2019
Contact name Jeffrey Zhao
Organization name Memorial Sloan Kettering Cancer Center
Department Genomics Core
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (15)
GSM2247776 s_RCC290_1
GSM2247777 s_RCC344hg_1
GSM2247778 s_RCC351_1
BioProject PRJNA330854
SRA SRP079226

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84697_run_RNASTAR_pipe.txt.gz 984.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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