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Series GSE83939 Query DataSets for GSE83939
Status Public on Jul 01, 2016
Title mRNA-seq analysis of HCT116 cells following gene overexpression of IDO1 with or without Indole treatment
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the effect of indole on protection against colon injury and the role of IDO1 expression, we examined the effect of indole on hIDO1-overexpressing and empty vector control HCT116 cells by global gene expression profiling.
Overall design Examination of mRNA levels from hIDO1-overexpressing and control HCT116 cell lines treated with 1mM indole or DMF for 24 hours using two replicates each.
Contributor(s) Lee Y
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Submission date Jul 01, 2016
Last update date May 15, 2019
Contact name Ji-Hee Shin
Organization name Seoul National University
Street address 1, Gwanak-ro, Gwanak-gu
City Seoul
ZIP/Postal code KS013
Country South Korea
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (4)
GSM2222278 HCT116_DMF
GSM2222279 HCT116_Indole
GSM2222280 HCT116_IDO1ovx_DMF
BioProject PRJNA327493
SRA SRP077713

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83939_RAW.tar 2.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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