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Series GSE83905 Query DataSets for GSE83905
Status Public on Oct 28, 2016
Title RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT) or phospho-mimetic (S200D) FLAG-LIN28A in PA1 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To explore the effect of LIN28 (S200) phosphorylation on LIN28's association with mRNAs on a transcriptome-wide scale, we performed mRNA-seq on RNAs immunoprecipitated (RIP-seq) by wild-type (WT) or phospho-mimetic (S200D) LIN28 in PA1 cells.
Overall design Examination of mRNAs immunoprecipitated by wild-type and phospho-mimetic (S200D) FLAG-LIN28 (in triplicate)
Contributor(s) Tsanov KM, Pearson DS, Han A, Daley GQ
Citation(s) 27992407
Submission date Jun 30, 2016
Last update date Jun 26, 2019
Contact name Areum Han
Organization name Boston Children's Hospital
Lab Daley lab
Street address Karp Family Building, 7th Floor. 300 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (18)
GSM2221312 PA1_Ctrl_IP_rep1
GSM2221313 PA1_WT_IP_rep1
GSM2221314 PA1_S200D_IP_rep1
This SubSeries is part of SuperSeries:
GSE83906 RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT), phospho-mimetic (S200D), or phospho-null (S200A) FLAG-LIN28A
BioProject PRJNA327371
SRA SRP077647

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83905_RIP1_PA1_RPKM.xls.gz 3.7 Mb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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