GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE83904 Query DataSets for GSE83904
Status Public on Oct 28, 2016
Title RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT) or phospho-null (S200A) FLAG-LIN28A in HeLa cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To explore the effect of LIN28 (S200) phosphorylation on LIN28's association with mRNAs on a transcriptome-wide scale, we performed mRNA-seq on RNAs immunoprecipitated (RIP-seq) by wild-type (WT) or phospho-null (S200A) LIN28 in HeLa cells.
Overall design Examination of mRNAs immunoprecipitated by wild-type and phospho-null (S200A) FLAG-LIN28 (in triplicate)
Contributor(s) Tsanov KM, Pearson DS, Han A, Daley GQ
Citation(s) 27992407
Submission date Jun 30, 2016
Last update date Jun 26, 2019
Contact name Areum Han
Organization name Boston Children's Hospital
Lab Daley lab
Street address Karp Family Building, 7th Floor. 300 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (18)
GSM2221294 HeLa_Ctrl_Input_rep1
GSM2221295 HeLa_Ctrl_Input_rep2
GSM2221296 HeLa_Ctrl_Input_rep3
This SubSeries is part of SuperSeries:
GSE83906 RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT), phospho-mimetic (S200D), or phospho-null (S200A) FLAG-LIN28A
BioProject PRJNA327372
SRA SRP077646

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83904_RIP2_Hela_RPKM.xlsx 3.6 Mb (ftp)(http) XLSX
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap