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Series GSE83728 Query DataSets for GSE83728
Status Public on Apr 27, 2017
Title Epigenetic Lanscape and BRD4 Transcriptional Dependency of PAX3-FOXO1 Driven Rhabdomyosarcoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 28446439, 32744500, 34836971
Submission date Jun 26, 2016
Last update date Dec 15, 2021
Contact name Javed Khan
Phone 2407606135
Organization name NCI, NIH
Department Genetics Branch
Lab Javed Khan
Street address 37 Convent Dr.
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (80)
GSM2214061 7250-empty RNA-seq
GSM2214062 7250-PAX3-FOXO1 RNA-seq
GSM2214063 RH4 JQ1 500nM 6hr RNA-seq
This SuperSeries is composed of the following SubSeries:
GSE83724 PAX3-FOXO1 requires BRD4 to drive oncogene addiction in RMS cells [RNA-seq]
GSE83725 PAX3-FOXO1 establishes myogenic super enhancers and recruits BRD4 de novo [7250 ChIP-seq]
GSE83726 PAX3-FOXO1 establishes myogenic super enhancers [RMS Chip-seq]
BioProject PRJNA326873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83728_RAW.tar 39.6 Mb (http)(custom) TAR (of BED, BEDGRAPH, FPKM_TRACKING)
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