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Series GSE83353 Query DataSets for GSE83353
Status Public on Jun 15, 2016
Title Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Liquid biopsy profile which can screen for early CRC. We aimed to depict the profile of early stage CRC as well as for advanced adenomas by combination of current molecular knowledge with microarray technology, using efficient circulating free RNA purification from blood and RNA amplification technologies.
Circulating free RNA profile of plasma from colorectal cancer patients, advanced adenomas and healthy colonoscopia subjects.
Overall design Plasma was drawn from 3 healthy colonoscopia subjects, 4 adanced adenomas subjects and 3 colorectal cancer patients. Circulating free RNA was purified from plasma samples and applied on GeneChip human 1.0 ST Arrays.
The 'HuGene_1_0_green_yelow_red_DATASET.xlsx' and 'probe_level_expression_matrix.txt' files contain the primary data that was used to draw the conclusions of the current study. Please note that exon-level' analysis was performed but NO probe summarization to probeset was performed, therefore both data matrices contains non-unique identifiers.
Contributor(s) Moshayoff V, Faktor O, Celesti G, Laghi L, Keret D, Cohen D, Israeli E
Citation(s) 27441409
Submission date Jun 14, 2016
Last update date Jan 25, 2019
Contact name Vardit Moshayoff
Organization name BioMarCare technology
Street address Hadassaah Medical Center, Ein Kerem
City Jerusalem
ZIP/Postal code 91100
Country Israel
Platforms (1)
GPL10739 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [probe set (exon) version]
Samples (10)
GSM2200153 Plasma cfRNA from healthy subject1
GSM2200154 Plasma cfRNA from healthy subject2
GSM2200155 Plasma cfRNA from healthy subject3
BioProject PRJNA325661

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83353_HuGene_1_0_green_yelow_red_DATASET.xlsx 153.7 Mb (ftp)(http) XLSX
GSE83353_RAW.tar 34.8 Mb (http)(custom) TAR (of CEL)
GSE83353_probe_level_expression_matrix.txt.gz 23.3 Mb (ftp)(http) TXT
Processed data are available on Series record

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