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GEO accession:
Series GSE82015
Query DataSets for GSE82015
Status
Public on Jan 08, 2017
Title
Neuronal activity modifies the chromatin accessibility landscape in the adult brain
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28166220
Submission date
May 27, 2016
Last update date
May 15, 2019
Contact name
Yijing Su
E-mail(s)
yijingsu@upenn.edu
Phone
4438386479
Organization name
University of Pennsylvania
Department
Department of Oral Medicine
Street address
Levy 326
City
Philadelphia
State/province
PA
ZIP/Postal code
19428
Country
USA
Platforms (3)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (56)
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More...
GSM2179990
E0_rep1 ATAC-seq
GSM2179991
E0_rep2 ATAC-seq
GSM2179992
E0_rep3 ATAC-seq
GSM2179993
E0_rep4 ATAC-seq
GSM2179994
E1_rep1 ATAC-seq
GSM2179995
E1_rep2 ATAC-seq
GSM2179996
E1_rep3 ATAC-seq
GSM2179997
E1_rep4 ATAC-seq
GSM2179998
E4_rep1 ATAC-seq
GSM2179999
E4_rep2 ATAC-seq
GSM2180000
E4_rep3 ATAC-seq
GSM2180001
E4_rep4 ATAC-seq
GSM2180002
EYFP_OE_rep1 ATAC-seq
GSM2180003
EYFP_OE_rep2 ATAC-seq
GSM2180004
EYFP_OE_rep3 ATAC-seq
GSM2180005
cFos_OE_rep1 ATAC-seq
GSM2180006
cFos_OE_rep2 ATAC-seq
GSM2180007
cFos_OE_rep3 ATAC-seq
GSM2180008
shRNA-Ctrl_E0_rep1 ATAC-seq
GSM2180009
shRNA-Ctrl_E0_rep2 ATAC-seq
GSM2180010
shRNA-Ctrl_E0_rep3 ATAC-seq
GSM2180011
shRNA-Ctrl_E1_rep1 ATAC-seq
GSM2180012
shRNA-Ctrl_E1_rep2 ATAC-seq
GSM2180013
shRNA-Ctrl_E1_rep3 ATAC-seq
GSM2180014
shRNA-cFos_E0_rep1 ATAC-seq
GSM2180015
shRNA-cFos_E0_rep2 ATAC-seq
GSM2180016
shRNA-cFos_E0_rep3 ATAC-seq
GSM2180017
shRNA-cFos_E1_rep1 ATAC-seq
GSM2180018
shRNA-cFos_E1_rep2 ATAC-seq
GSM2180019
E0_rep1 RNA-seq
GSM2180020
E0_rep2 RNA-seq
GSM2180021
E0_rep3 RNA-seq
GSM2180022
E1_rep1 RNA-seq
GSM2180023
E1_rep2 RNA-seq
GSM2180024
E1_rep3 RNA-seq
GSM2180025
E4_rep1 RNA-seq
GSM2180026
E4_rep2 RNA-seq
GSM2180027
E4_rep3 RNA-seq
GSM2180028
EYFP_OE_rep1 RNA-seq
GSM2180029
EYFP_OE_rep2 RNA-seq
GSM2180030
EYFP_OE_rep3 RNA-seq
GSM2180031
cFos_OE_rep1 RNA-seq
GSM2180032
cFos_OE_rep2 RNA-seq
GSM2180033
cFos_OE_rep3 RNA-seq
GSM2180034
shRNA-Ctrl_E0_rep1 RNA-seq
GSM2180035
shRNA-Ctrl_E0_rep2 RNA-seq
GSM2180036
shRNA-Ctrl_E0_rep3 RNA-seq
GSM2180037
shRNA-Ctrl_E1_rep1 RNA-seq
GSM2180038
shRNA-Ctrl_E1_rep2 RNA-seq
GSM2180039
shRNA-Ctrl_E1_rep3 RNA-seq
GSM2180040
shRNA-cFos_E0_rep1 RNA-seq
GSM2180041
shRNA-cFos_E0_rep2 RNA-seq
GSM2180042
shRNA-cFos_E0_rep3 RNA-seq
GSM2180043
shRNA-cFos_E1_rep1 RNA-seq
GSM2180044
shRNA-cFos_E1_rep2 RNA-seq
GSM2180045
shRNA-cFos_E1_rep3 RNA-seq
This SuperSeries is composed of the following SubSeries:
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More...
GSE82010
Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq WT)
GSE82011
Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq OE)
GSE82012
Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq KD)
GSE82013
Neuronal activity modifies the chromatin accessibility landscape in the adult brain (RNA-Seq WT)
GSE82014
Neuronal activity modifies the chromatin accessibility landscape in the adult brain (RNA-Seq OE)
Relations
BioProject
PRJNA323617
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE82015_RAW.tar
19.4 Mb
(http)
(custom)
TAR (of BED)
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