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Series GSE82001 Query DataSets for GSE82001
Status Public on Oct 02, 2016
Title ATACseq to determine chromatin accessibility in activated or Tfr-suppressed B cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Tfh and B cells were cultured together with or without Tfr cells. After 4 days Tfh and B cells were sorted and prepared for ATAC-seq
Overall design Examination of chromatin accessibility in activated or suppressed B cells
Contributor(s) Sharpe AH, Sage PT
Citation(s) 27695002
Submission date May 27, 2016
Last update date May 15, 2019
Contact name Arlene Sharpe
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Street address 77 Avenue Louis Pasteur
City Boston
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (4)
GSM2179821 Activated B 1
GSM2179822 Activated B 2
GSM2179823 Suppressed B 1
This SubSeries is part of SuperSeries:
GSE82003 TFR Cell Suppression Leads to Durable and Selective Inhibition of B Cell Effector Functions
BioProject PRJNA323600
SRA SRP075826

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE82001_RAW.tar 1.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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