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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 01, 2017 |
| Title |
ChIP-seq of Lmnb1-/- and Lmnb1+/- olfactory lineages |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Lamins, the major components of the nuclear lamina, have diverse functions in many cellular processes. Despite broad expression, lamins have been implicated in cell type-specific roles in development, aging and disease by regulating gene expression. Yet, due to the lack of in depth lineage-specific functional studies, it remains unclear whether or how lamins regulate cell type-specific functions. Using targeted knockout of lamin B1 in the olfactory sensory neuron lineage, we show that lamin B1 is not required for early stages of olfactory sensory neuron differentiation but is needed for formation of mature neurons that properly respond to odor stimulation. Lamin B1 mutant cells exhibited decreased expression of genes involved in mature neuron function, increased expression of genes atypical of the olfactory lineage and clustered nuclear pore distribution. These results demonstrate that the universally expressed lamin B1 regulates cell type-specific gene expression and terminal differentiation.
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| Overall design |
Samples were generated from sorted regenerated olfactory epithelium cells lacking Lamin B1 (Lmnb1) and control (heterozygous cells). Each sample was collected from one mouse. Data are from two experimental samples, one control and one mutant, each split and probed for H3K4me3 and H3K9me3 separately. Treatment, sample preparation, sequencing, animal sex, age, and parents are the same for mutant and control.
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| Contributor(s) |
Gigante CM, Zheng Z, Zhao H, Zheng Y |
| Citation(s) |
28425486 |
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| Submission date |
Apr 14, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Haiqing Zhao |
| E-mail(s) |
hzhao@jhu.edu
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| Organization name |
Johns Hopkins University
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| Department |
Biology
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| Street address |
3400 N Charles St
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| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21218 |
| Country |
USA |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA318504 |
| SRA |
SRP073314 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE80290_RAW.tar |
470.3 Mb |
(http)(custom) |
TAR (of BED, BEDGRAPH, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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