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Series GSE80264 Query DataSets for GSE80264
Status Public on May 05, 2016
Title Transcriptome analysis of H9 hESC derived cerebral organoids
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq was utilized to characterize the transcriptome of human embryonic stem cells-derived 3D cerebral organoids. Briefly, H9 hESCs were differentiated into cerebral organoids using previously established methods (Lancaster, 2013). Coding and noncoding genes were analyzed in 1 month and 2 month old cerebral organoid samples.
Overall design Examination of transcriptome of hESC and cerebral organoids 1 month and 2 months old with 2 experimental replicates per group.
Contributor(s) Dang J, Rana T
Citation(s) 27162029
Submission date Apr 14, 2016
Last update date May 15, 2019
Contact name Tariq Rana
Organization name University of California, San Diego
Department Pediatrics
Street address 9500 Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM2123101 H9 hESC 1
GSM2123102 H9 hESC 2
GSM2123103 1 month organoid 1
BioProject PRJNA318446
SRA SRP073286

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Supplementary file Size Download File type/resource
GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz 206.0 Kb (ftp)(http) TXT
GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz 213.5 Kb (ftp)(http) TXT
GSE80264_Group_3_vs._Group_2_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz 6.7 Kb (ftp)(http) TXT
GSE80264_RNA-Seq_results_Ensembl.gene.rpkm.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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