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Series GSE80232 Query DataSets for GSE80232
Status Public on Aug 25, 2016
Title Smart-seq2 analysis of P17 FACS sorted retinal cells from the Tg(Chx10-EGFP/cre,-ALPP)2Clc or Vsx2-GFP transgenic line
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Three Vsx2-GFP mouse retinas were dissected, dissociated and FACS sorted, and single cell RNA-seq libraries were generated for 288 single cells and 3 bulk libraries using Smart-seq2 (~10,000 cells each)
Overall design Three mouse retinas (labeled 1a, 2a, 2b) were used, and 96 single cells from each were processed using Smart-seq2. A bulk RNA-seq control of 10,000 cells from each retina was also prepared
Contributor(s) Shekhar K
Citation(s) 27565351
Submission date Apr 13, 2016
Last update date May 15, 2019
Contact name Karthik Shekhar
Phone 217-979-9852
Organization name Broad Institute
Street address 415 Main St.
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (291)
GSM2121293 Vsx2_1a_A1_S1_R1_001
GSM2121294 Vsx2_1a_A10_S10_R1_001
GSM2121295 Vsx2_1a_A11_S11_R1_001
This SubSeries is part of SuperSeries:
GSE81905 Single cell RNA-sequencing of retinal bipolar cells
BioProject PRJNA318366
SRA SRP073242

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80232_vsx2.RSEM.genes.counts.matrix.txt.gz 4.1 Mb (ftp)(http) TXT
GSE80232_vsx2.RSEM.genes.tpm.matrix.txt.gz 4.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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