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Series GSE79771 Query DataSets for GSE79771
Status Public on Nov 15, 2016
Title DNA methylation is required for chromatin binding by Mbd2 and Mbd3 in ES cells
Organism Mus musculus
Experiment type Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 27849519
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HD072122 Roles of Chromatin Regulation in Embryonic Stem Cell Self-Renewal UNIV OF MASSACHUSETTS MED SCHOOL THOMAS G. FAZZIO
Submission date Mar 31, 2016
Last update date May 15, 2019
Contact name Sarah J Hainer
E-mail(s) sarah.hainer@pitt.edu
Organization name University of Pittsburgh
Department Department of Biological Sciecnes
Lab Hainer Lab
Street address 4249 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15260
Country USA
 
Platforms (2)
GPL10333 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (78)
GSM2102210 EGFP KD rep 1
GSM2102211 EGFP KD rep 2
GSM2102212 Dnmt1 KD rep 1
This SuperSeries is composed of the following SubSeries:
GSE79769 DNA methylation is required for chromatin binding by Mbd2 and Mbd3 in ES cells (mRNA)
GSE79770 DNA methylation is required for chromatin binding by Mbd2 and Mbd3 in ES cells (ChIP-Seq, meDIP-seq and hmDIP-seq)
GSE86965 DNA methylation is required for chromatin binding by Mbd2 and Mbd3 in ES cells (ChIP-Seq)
Relations
BioProject PRJNA316975

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79771_RAW.tar 7.7 Gb (http)(custom) TAR (of BEDGRAPH, TXT)
SRA Run SelectorHelp

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