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Series GSE78604 Query DataSets for GSE78604
Status Public on Mar 18, 2016
Title total RNA-seq from pericyte cell (ENCSR000CTX)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CTX/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2072455 total RNA-seq from pericyte cell (ENCLB555ALM)
GSM2072456 total RNA-seq from pericyte cell (ENCLB555ALN)
Relations
Supersedes GSM981255

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78604_ENCFF000GJX_contigs_hg19.bigBed 39.0 Mb (ftp)(http) BIGBED
GSE78604_ENCFF000GJY_exon_quantifications_hg19.gtf.gz 17.5 Mb (ftp)(http) GTF
GSE78604_ENCFF000GKA_exon_quantifications_hg19.gtf.gz 19.7 Mb (ftp)(http) GTF
GSE78604_ENCFF000GKG_gene_quantifications_hg19.gtf.gz 5.1 Mb (ftp)(http) GTF
GSE78604_ENCFF000GKI_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE78604_ENCFF000GKK_splice_junctions_hg19.bigBed 11.1 Mb (ftp)(http) BIGBED
GSE78604_ENCFF000GKT_transcript_quantifications_hg19.gtf.gz 5.8 Mb (ftp)(http) GTF
GSE78604_ENCFF000GKV_transcript_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE78604_ENCFF146VKH_splice_junctions_hg19.bed.gz 10.1 Mb (ftp)(http) BED
GSE78604_ENCFF758TTK_contigs_hg19.bed.gz 30.8 Mb (ftp)(http) BED
GSE78604_RAW.tar 5.4 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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