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Series GSE78603 Query DataSets for GSE78603
Status Public on Mar 18, 2016
Title polyA depleted RNA-seq from keratinocyte (ENCSR000CQO)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from independent growths of skin keratinocytes primary nuclear extracts, NHEK. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted and DSN normalized Poly-A- RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CQO/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2072453 polyA depleted RNA-seq from keratinocyte (ENCLB555ANJ)
GSM2072454 polyA depleted RNA-seq from keratinocyte (ENCLB555ANK)
Relations
Supersedes GSM767846

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78603_ENCFF000IDP_contigs_hg19.bigBed 21.5 Mb (ftp)(http) BIGBED
GSE78603_ENCFF000IDQ_exon_quantifications_hg19.gtf.gz 10.1 Mb (ftp)(http) GTF
GSE78603_ENCFF000IDT_exon_quantifications_hg19.gtf.gz 17.8 Mb (ftp)(http) GTF
GSE78603_ENCFF000IDU_gene_quantifications_hg19.gtf.gz 4.0 Mb (ftp)(http) GTF
GSE78603_ENCFF000IDW_gene_quantifications_hg19.gtf.gz 5.1 Mb (ftp)(http) GTF
GSE78603_ENCFF000IDY_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE78603_ENCFF000IEA_splice_junctions_hg19.bigBed 6.5 Mb (ftp)(http) BIGBED
GSE78603_ENCFF000IEG_transcript_quantifications_hg19.gtf.gz 5.6 Mb (ftp)(http) GTF
GSE78603_ENCFF000IEH_transcript_quantifications_hg19.gtf.gz 19.8 Mb (ftp)(http) GTF
GSE78603_ENCFF000IEK_transcript_quantifications_hg19.gtf.gz 4.7 Mb (ftp)(http) GTF
GSE78603_ENCFF402QPD_contigs_hg19.bed.gz 14.7 Mb (ftp)(http) BED
GSE78603_ENCFF969ZZW_splice_junctions_hg19.bed.gz 5.2 Mb (ftp)(http) BED
GSE78603_RAW.tar 4.2 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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