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Series GSE77902 Query DataSets for GSE77902
Status Public on May 24, 2016
Title RNA-Seq of siRNA-mediated knockdown of the lncRNA SLNCR1 in WM1976 melanoma cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq was used to profile transcriptional changes induced by siRNA knockdown of the long non-coding RNA SLNCR1.
Overall design The WM1976 melanoma short-term culture was transfected with either scrambled or SLNCR1-targeting siRNAs
Contributor(s) Schmidt K, Novina C
Citation(s) 27210747
Submission date Feb 13, 2016
Last update date May 15, 2019
Contact name Carl Novina
Organization name Dana-Farber Cancer Institute
Department Cancer Immunology
Lab Carl Novina
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM2061146 scrambled control rep1
GSM2061147 scrambled control rep2
GSM2061148 siRNA SLNCR1 rep1
This SubSeries is part of SuperSeries:
GSE77903 RNA-Seq of over-expression and knockdown of the lncRNA SLNCR1 in melanoma cells
BioProject PRJNA311991
SRA SRP070082

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz 965.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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