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Series GSE77901 Query DataSets for GSE77901
Status Public on May 24, 2016
Title RNA-Seq of SLNCR1 over-expression in the melanoma cell line A375
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq was used to profile transcriptional changes induced by overexpression of the long non-coding RNA SLNCR1, as well as mutant version SLNCR1 delta conserved and SLNCR1 conserved.
Overall design The A375 melanoma cell line was transfected with pcDNA3.1 (-) expressing either full length SLNCR1, SLNCR1 delta conserved, or SLNCR1 conserved.
Contributor(s) Schmidt K, Novina C
Citation(s) 27210747
Submission date Feb 13, 2016
Last update date May 15, 2019
Contact name Carl Novina
Organization name Dana-Farber Cancer Institute
Department Cancer Immunology
Lab Carl Novina
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM2061138 vector rep1
GSM2061139 vector rep2
GSM2061140 SLNCR1 rep1
This SubSeries is part of SuperSeries:
GSE77903 RNA-Seq of over-expression and knockdown of the lncRNA SLNCR1 in melanoma cells
BioProject PRJNA311990
SRA SRP070081

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77901_SLNCR1_vs_vector.deseq.txt.gz 1.1 Mb (ftp)(http) TXT
GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz 1.1 Mb (ftp)(http) TXT
GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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