|
| Status |
Public on Dec 31, 2016 |
| Title |
Deep Sequencing Leads to the Identification of Eukaryotic Translation Initiation Factor 5A as a Key Element in Rsv1-Mediated Lethal Systemic Hypersensitive Response to Soybean Mosaic Virus Infection in Soybean |
| Organism |
Glycine max |
| Experiment type |
Expression profiling by high throughput sequencing
Other
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We reported a genome-wide investigation to gain insight into the molecular signaling pathway involved in SMV G7 provoking Rsv1-mediated LSHR based on sRNA-seq, degradome-seq and transcriptome-seq analysis.
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| |
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| Overall design |
mRNA, miRNAs and degradome profiles of Rsv1-genotype soybean (PI96983) after 14 days post-inoculation (dpi) by SMV-L (avirulent strain), SMV-G7 (virulent strain) and Mock (control) were generated by deep sequencing, pooled from three biological replicates (5 plants in each replicate) for each treatment, using Illumina Miseq.
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| |
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| Contributor(s) |
Chen H, Arsovski AA, Yu K, Wang A |
| Citation(s) |
27019403 |
| |
| Submission date |
Feb 10, 2016 |
| Last update date |
Sep 23, 2019 |
| Contact name |
Hui Chen |
| E-mail(s) |
Hui.Chen@agr.gc.ca
|
| Phone |
001-519-953-6710
|
| Organization name |
Agriculture and Agri-Food Canada
|
| Street address |
1391 Sandford St.
|
| City |
London |
| State/province |
Ontario |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
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| Platforms (1) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA311571 |
| SRA |
SRP069875 |
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