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Series GSE77557 Query DataSets for GSE77557
Status Public on Apr 05, 2016
Title Affymetrix SNP6.0 array data for EBF1-PDGFRB rearranged acute lymphoblastic leukemia
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary The EBF1-PDGFRB gene fusion accounts for <1% B-cell precursor acute lymphoblastic leukaemia and occurs within the Philadelphia-like ALL subtype. We performed Affymetrix SNP 6.0 array was undertaken patients who tested positive for EBF1-PDGFRB rearrangement by FISH and/or RT-PCR.
Overall design We performed Affymetrix SNP 6.0 array on genomic DNA extracted from bone marrow samples taken at diagnosis in 9 patients, at relapse in one patient and at remission in one patient.
Contributor(s) Schwab C, Harrison C
Citation(s) 26872634
Submission date Feb 03, 2016
Last update date Nov 27, 2018
Contact name Claire Joanne Schwab
Organization name Newcastle University
Department Northern Institute for Cancer Research
Lab Leukaemia Research Cytogenetic Group
Street address Level 5, Sir James Spence Institute, Queen Victoria Rd
City Newcastle upon Tyne
State/province Tyne and Wear
ZIP/Postal code NE1 4LP
Country United Kingdom
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (11)
GSM2054457 4607_SNP6.0
GSM2054458 5630_diag_SNP6.0
GSM2054459 5630_relapse_SNP6.0
BioProject PRJNA310784

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77557_RAW.tar 686.3 Mb (http)(custom) TAR (of CEL, CNCHP)
Processed data included within Sample table
Processed data provided as supplementary file

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