GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE77347 Query DataSets for GSE77347
Status Public on Jun 07, 2016
Title Ribosomal footprinting of MDA_Ctrl and MDA_Glu overexpression cell lines
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We used Illlumina Artseq Ribo Profile to perform ribosome footprinting on the above cell lines
Overall design We followed the manufacturer's protocol: Cells were treated with cycloheximide (0.1 mg/ml) to inhibit translation; total RNA and ribosome-protected RNA fragments were isolated and library preped for sequencing simultaneously.
Contributor(s) Goodarzi H, Nguyen HC, Tavazoie SF
Citation(s) 27259150
Submission date Jan 28, 2016
Last update date May 15, 2019
Contact name Hani Goodarzi
Organization name UCSF
Department Biochemistry and Biophysics
Street address 600 16th St, GH S312D
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (24)
GSM2049892 MDA-ctrl-RPF-rep1-readlane1
GSM2049894 MDA-ctrl-RPF-rep1-readlane2
GSM2049896 MDA-ctrl-TT-rep1-readlane1
This SubSeries is part of SuperSeries:
GSE77401 Modulated expression of specific tRNA species drives cancer progression
BioProject PRJNA310107
SRA SRP069011

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77347_MDA-ctrl-1-RPF_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-ctrl-1-TT_isoforms.fpkm_tracking.gz 1.4 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-ctrl-2-RPF_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-ctrl-2-TT_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-glu-1-RPF_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-glu-1-TT_isoforms.fpkm_tracking.gz 1.4 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-glu-2-RPF_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
GSE77347_MDA-glu-2-TT_isoforms.fpkm_tracking.gz 1.3 Mb (ftp)(http) FPKM_TRACKING
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap