GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE77315 Query DataSets for GSE77315
Status Public on Jun 07, 2016
Title Ribosomal footprinting of MDA-Parental and MDA-LM2
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We used Illlumina Artseq Ribo Profile to perform ribosome footprinting on the above cell lines
Overall design We followed the manufacturer's protocol: Cells were treated with cycloheximide (0.1 mg/ml) to inhibit translation; total RNA(tt) and ribosome-protected RNA fragments (RPF) were isolated and library preped for sequencing simultaneously.
Contributor(s) Goodarzi H, Nguyen HC, Tavazoie SF
Citation(s) 27259150
Submission date Jan 27, 2016
Last update date May 15, 2019
Contact name Hani Goodarzi
Organization name UCSF
Department Biochemistry and Biophysics
Street address 600 16th St, GH S312D
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM2049157 MDA-RPF-rep1
GSM2049158 MDA-RPF-rep2
GSM2049159 MDA-TT-rep1
This SubSeries is part of SuperSeries:
GSE77401 Modulated expression of specific tRNA species drives cancer progression
BioProject PRJNA310015
SRA SRP068977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77315_RAW.tar 10.6 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap