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GEO accession:
Series GSE76934
Query DataSets for GSE76934
Status
Public on May 13, 2019
Title
Reversible transitions between transformed and differentiated states in AML
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31374198
Submission date
Jan 16, 2016
Last update date
Aug 05, 2019
Contact name
Ruijie Liu
E-mail(s)
cynthia.liu@adelaide.edu.au
Organization name
the university of Adelaide
Street address
Mudla Wirra Rd
City
Roseworthy
State/province
South Australia
ZIP/Postal code
5371
Country
Australia
Platforms (2)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (53)
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GSM2039361
AML246 untreated technical rep1
GSM2039362
AML246 d2 Dox technical rep1
GSM2039363
AML246 d4 Dox technical rep 1
GSM2039364
AML246 d6 Dox technical rep 1
GSM2039365
AML246 d6 Dox technical rep 2
GSM2039366
AML246 d2 Dox technical rep2
GSM2039367
AML246 untreated technical rep2
GSM2039368
AML246 d4 Dox technical rep2
GSM2039369
AML246 untreated technical rep3
GSM2039370
AML246 d2 Dox technical rep3
GSM2039371
AML246 d6 Dox technical rep3
GSM2039372
AML246 d4 Dox technical rep 3
GSM2039373
AML410 untreated technical rep1
GSM2039374
AML410 d6 Dox technical rep1
GSM2039375
AML410 d6 Dox technical rep2
GSM2039376
AML410 d2 Dox technical rep1
GSM2039377
AML410 d4 Dox technical rep1
GSM2039378
AML410 d2 Dox technical rep2
GSM2039379
AML410 d4 Dox technical rep2
GSM2039380
AML410 untreated technical rep2
GSM2916369
PU.1 restoration Day 0
GSM2916370
PU.1 restoration Day 4
GSM2916371
PU.1 restoration Day 8
GSM2916372
PU.1 restoration Day 12
GSM2916373
PU.1 restoration Day 12- MAC1
GSM2916374
PU.1 knockdown Day 12- 4
GSM2916375
PU.1 knockdown Day 12- 8
GSM2916376
PU.1 knockdown Day 12- 12
GSM2916377
PU.1 ChIP restoration Day 0
GSM2916378
PU.1 ChIP restoration Day 4
GSM2916379
PU.1 ChIP restoration Day 8
GSM2916380
PU.1 ChIP restoration Day 12
GSM2916381
PU.1 ChIP knockdown Day 12- 4
GSM2916382
PU.1 ChIP knockdown Day 12- 8
GSM2916383
PU.1 ChIP knockdown Day 12- 12
GSM2916384
PU.1 ChIP
GSM2916385
Day0 replicate A
GSM2916386
Day0 replicate B
GSM2916387
Day4 replicate A
GSM2916388
Day4 replicate B
GSM2916389
Day8 replicate A
GSM2916390
Day8 replicate B
GSM2916391
Day12 replicate A
GSM2916392
Day12 replicate B
GSM2916393
Day12M replicate A
GSM2916394
Day12M replicate B
GSM2916395
Day12-4 replicate A
GSM2916396
Day12-4 replicate B
GSM2916397
Day12-8 replicate A
GSM2916398
Day12-8 replicate B
GSM2916399
Day12-12 replicate A
GSM2916400
Day12-12 replicate B
GSM2931660
Clone 2 AML246 cells untreated and Doxycline treated
This SuperSeries is composed of the following SubSeries:
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GSE76874
Expression profiling of murine cytogenetic normal p53-/- shPU.1 AML cells following gradual PU.1 restoration
GSE76875
Expression profiling of murine monosomal karyotype p53-/- shPU.1 AML cells following gradual PU.1 restoration
GSE108944
ATAC-seq time course in mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown
GSE108945
PU.1 ChIP-seq time course in mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown
GSE108946
Transcriptome time course of mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown
GSE109100
Single cell expression profiling of murine p53-/- shPU.1 AML cells following PU.1 restoration
Relations
BioProject
PRJNA308991
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE76934_RAW.tar
2.4 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH, TXT)
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