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Series GSE76419 Query DataSets for GSE76419
Status Public on Sep 26, 2016
Title Dino-dependent gene expression signature in MEFs
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Genetically modified Dino mice were generated with loxP sites flanking the mouse Dino gene. We set out to identify the set of genes regulated by Dino in DNA damaged mouse embryonic fibroblasts using 3' sequencing. Early passage Dino+/+ or Dino loxP/loxP MEFs were treated with 0.2ug/mL doxorubicin prior to addition of Trizol and RNA isolation.
Overall design We examined gene expression by 3seq in early passage Dino_+/+ and Dino_lox/lox MEFs treated with 0.2ug/mL doxorubicin or vehicle alone for 8 hours.
Contributor(s) Schmitt A, Shen Y, Chang H
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Submission date Dec 30, 2015
Last update date May 15, 2019
Contact name Adam Schmitt
Phone 650-736-0305
Fax 650-723-8762
Organization name Stanford University
Department Department of Dermatology
Lab Howard Y. Chang
Street address 269 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305-5168
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM2011207 WT_UTC.A_3'seq
GSM2011208 WT_UTC.B_3'seq
GSM2011209 WT_DOX.A_3'seq
This SubSeries is part of SuperSeries:
GSE76420 LncRNA DINO guides DNA damage signaling
BioProject PRJNA307253
SRA SRP067919

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76419_raw_counts_table.txt.gz 297.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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