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Series GSE76213 Query DataSets for GSE76213
Status Public on Jun 27, 2017
Title Copy Number Variation of human hepatocellular carcinoma (HCC) and Cholangiocarcinoma (CCA) from the Thailand Initiative in Genomics and Expression Research for Liver Cancer (TIGER-LC)
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary We used Affymetrix SNP6.0 microarray profiling to analyze Copy Number Variation in tumor and paired non-tumor tissue of HCC and CCA patients.
We used copy number data to confirm molecular subgroups of HCC and CCA patients from Thailand
Overall design For profiling of copy number, tumors and paired non-tumor tissues were profiled separately using Affymetrix Genome-Wide Human SNP Nsp/Sty 6.0 according to the manufacturer's protocol.
Contributor(s) Xin Wei W
Citation(s) 28648284
Submission date Dec 21, 2015
Last update date Nov 27, 2018
Contact name Xin Wei Wang
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (304)
GSM1976594 HCC Non-Tumor Tissue LCS_501B
GSM1976595 HCC Non-Tumor Tissue LCS_502B
GSM1976596 HCC Non-Tumor Tissue LCS_503B
This SubSeries is part of SuperSeries:
GSE76311 Human hepatocellular carcinoma (HCC) and Cholangiocarcinoma (CCA) from Thailand Initiative in Genomics and Expression Research for Liver Cancer (TIGER-LC)
BioProject PRJNA306873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76213_RAW.tar 8.4 Gb (http)(custom) TAR (of CEL)
GSE76213_TIGER_LC_intensity.txt.gz 2.9 Gb (ftp)(http) TXT
Processed data are available on Series record

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