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Series GSE75821 Query DataSets for GSE75821
Status Public on Dec 09, 2015
Title Early regulation of profibrotic genes in primary human cardiac myocytes by Trypanosoma cruzi
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The molecular mechanisms of Trypanosoma cruzi induced cardiac fibrosis remains to be elucidated. Primary human cardiomyoctes (PHCM) exposed to invasive T. cruzi trypomastigotes were used for transcriptome profiling and downstream bioinformatic analysis to determine fibrotic-associated genes regulated early during infection process (0 to 120 minutes). The identification of early molecular host responses to T. cruzi infection can be exploited to delineate important molecular signatures that can be used for the classification of Chagasic patients at risk of developing heart disease. Our results show distinct gene network architecture with multiple gene networks modulated by the parasite with an incline towards progression to a fibrogenic phenotype. Early during infection, T. cruzi significantly upregulated transcription factors including activator protein 1 (AP1) transcription factor network components (including FOSB, FOS and JUNB), early growth response proteins 1 and 3 (EGR1, EGR3), and cytokines/chemokines (IL5, IL6, IL13, CCL11), which have all been implicated in the onset of fibrosis. The changes in our selected genes of interest did not all start at the same time point. The transcriptome microarray data, validated by quantitative Real-Time PCR, was also confirmed by immunoblotting and customized Enzyme Linked Immunosorbent Assays (ELISA) array showing significant increases in the protein expression levels of fibrogenic EGR1, SNAI1 and IL 6. Furthermore, phosphorylated SMAD2/3 which induces a fibrogenic phenotype is also upregulated accompanied by an increased nuclear translocation of JunB. Pathway analysis of the validated genes and phospho-proteins regulated by the parasite provides the very early fibrotic interactome operating when T. cruzi comes in contact with PHCM. The interactome architecture shows that the parasite induces both TGF-β dependent and independent fibrotic pathways, providing an early molecular foundation for Chagasic cardiomyopathy. Examining the very early molecular events of T. cruzi cellular infection may provide disease biomarkers which will aid clinicians in patient assessment and identification of patient subpopulation at risk of developing Chagasic cardiomyopathy.
Overall design Primary Human Cardiomyoctes (low passage) were exposed to T. cruzi at different time points. The control was done in biological triplicates and the time points (60, 90 and 120 minutes) were done in biological duplicates.
Contributor(s) Udoko AN, Johnson CA, Dykan A, Rachakonda G, Villalta F, Mandape SN, Lima MF, Pratap S, Nde PN
Citation(s) 26771187
Submission date Dec 08, 2015
Last update date Nov 08, 2016
Contact name Pius N Nde
Phone 6153276997
Organization name Meharry Medical College
Department Microbiology and Immunology
Street address 1005 Dr. D.B. Todd Jr. Blvd
City Nashville
State/province TN
ZIP/Postal code 37208
Country USA
Platforms (1)
GPL11532 [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version]
Samples (9)
GSM1968466 Primary Human Cardiomyoctes control replicate 1
GSM1968467 Primary Human Cardiomyoctes control replicate 2
GSM1968468 Primary Human Cardiomyoctes control replicate 3
BioProject PRJNA305437

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Supplementary file Size Download File type/resource
GSE75821_RAW.tar 34.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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