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Series GSE75070 Query DataSets for GSE75070
Status Public on Aug 23, 2016
Title RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary RUNX1 is a transcription factor functioning both as an oncogene and a tumor suppressor in breast cancer. RUNX1 alters chromatin structure in cooperation with chromatin modifier and remodeling enzymes. In this study, we examined the relationship between RUNX1-mediated transcription and genome organization. We characterized genome-wide RUNX1 localization and performed RNA-seq and Hi-C in RUNX1-depleted and control MCF-7 breast cancer cells. RNA-seq analysis showed that RUNX1 depletion led to up-regulation of genes associated with chromatin structure and down-regulation of genes related to extracellular matrix biology, as well as NEAT1 and MALAT1 lncRNAs. Our ChIP-Seq analysis supports a prominent role for RUNX1 in transcriptional activation. About 30% of all RUNX1 binding sites were intergenic, indicating diverse roles in promoter and enhancer regulation and suggesting additional functions for RUNX1. Hi-C analysis of RUNX1-depleted cells demonstrated that overall three-dimensional genome organization is largely intact, but indicated enhanced association of RUNX1 near Topologically Associating Domain (TAD) boundaries and alterations in long-range interactions. These results suggest an architectural role for RUNX1 in fine-tuning local interactions rather than in global organization. Our results provide novel insight into RUNX1-mediated perturbations of higher-order genome organization that are functionally linked with RUNX1-dependent compromised gene expression in breast cancer cells.
 
Overall design Hi-C and RNA-seq experiments were conducted in MCF-7 shNS and shRUNX1 cells. RUNX1 ChIP-seq was conducted in wildtype MCF-7 cells.
Web link http://www.ncbi.nlm.nih.gov/pubmed/27514584
 
Contributor(s) Barutcu AR, Hong D, Lajoie BR, McCord RP, van Wijnen AJ, Lian JB, Stein JL, Dekker J, Imbalzano AN, Stein GS
Citation(s) 27514584
Submission date Nov 16, 2015
Last update date May 15, 2019
Contact name Rasim Barutcu
Organization name ScitoVation
Street address 6 Davis Drive
City Durham
State/province NC
ZIP/Postal code 27709
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (14)
GSM1942100 MCF-7 shNS Hi-C Replicate1
GSM1942101 MCF-7 shNS Hi-C Replicate2
GSM1942102 MCF-7 shRUNX1 Hi-C Replicate1
Relations
BioProject PRJNA302327
SRA SRP066276

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE75070_HiCStein-MCF7-shGFP_hg19_chr10_C-100000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr10_C-40000-iced.matrix.gz 5.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr11_C-100000-iced.matrix.gz 2.0 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr11_C-40000-iced.matrix.gz 4.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr12_C-100000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr12_C-40000-iced.matrix.gz 5.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr13_C-100000-iced.matrix.gz 1.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr13_C-40000-iced.matrix.gz 3.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr14_C-100000-iced.matrix.gz 1.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr14_C-40000-iced.matrix.gz 4.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr15_C-100000-iced.matrix.gz 1.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr15_C-40000-iced.matrix.gz 2.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr16_C-100000-iced.matrix.gz 831.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr16_C-40000-iced.matrix.gz 2.0 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr17_C-100000-iced.matrix.gz 960.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr17_C-40000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr18_C-100000-iced.matrix.gz 836.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr18_C-40000-iced.matrix.gz 1.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr19_C-100000-iced.matrix.gz 505.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr19_C-40000-iced.matrix.gz 1.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr1_C-100000-iced.matrix.gz 5.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr1_C-40000-iced.matrix.gz 11.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr20_C-100000-iced.matrix.gz 645.4 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr20_C-40000-iced.matrix.gz 1.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr21_C-100000-iced.matrix.gz 223.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr21_C-40000-iced.matrix.gz 653.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr22_C-100000-iced.matrix.gz 184.2 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr22_C-40000-iced.matrix.gz 479.1 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr2_C-100000-iced.matrix.gz 7.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr2_C-40000-iced.matrix.gz 16.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr3_C-100000-iced.matrix.gz 5.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr3_C-40000-iced.matrix.gz 11.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr4_C-100000-iced.matrix.gz 4.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr4_C-40000-iced.matrix.gz 9.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr5_C-100000-iced.matrix.gz 4.6 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr5_C-40000-iced.matrix.gz 10.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr6_C-100000-iced.matrix.gz 3.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr6_C-40000-iced.matrix.gz 8.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr7_C-100000-iced.matrix.gz 3.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr7_C-40000-iced.matrix.gz 7.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr8_C-100000-iced.matrix.gz 3.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr8_C-40000-iced.matrix.gz 8.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr9_C-100000-iced.matrix.gz 1.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chr9_C-40000-iced.matrix.gz 4.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chrX_C-100000-iced.matrix.gz 2.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_chrX_C-40000-iced.matrix.gz 5.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-1000000-iced.matrix.gz 18.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr10_chr10_cis.matrix.gz 622.4 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr11_chr11_cis.matrix.gz 592.3 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr12_chr12_cis.matrix.gz 613.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr13_chr13_cis.matrix.gz 339.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr14_chr14_cis.matrix.gz 290.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr15_chr15_cis.matrix.gz 247.3 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr16_chr16_cis.matrix.gz 226.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr17_chr17_cis.matrix.gz 224.1 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr18_chr18_cis.matrix.gz 208.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr19_chr19_cis.matrix.gz 119.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr1_chr1_cis.matrix.gz 1.6 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr20_chr20_cis.matrix.gz 137.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr21_chr21_cis.matrix.gz 52.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr22_chr22_cis.matrix.gz 47.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr2_chr2_cis.matrix.gz 1.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr3_chr3_cis.matrix.gz 1.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr4_chr4_cis.matrix.gz 1.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr5_chr5_cis.matrix.gz 1.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr6_chr6_cis.matrix.gz 972.3 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr7_chr7_cis.matrix.gz 851.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr8_chr8_cis.matrix.gz 716.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chr9_chr9_cis.matrix.gz 459.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shGFP_hg19_genome_C-250000-iced_chrX_chrX_cis.matrix.gz 741.4 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr10_C-100000-iced.matrix.gz 2.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr10_C-40000-iced.matrix.gz 5.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr11_C-100000-iced.matrix.gz 1.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr11_C-40000-iced.matrix.gz 4.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr12_C-100000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr12_C-40000-iced.matrix.gz 5.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr13_C-100000-iced.matrix.gz 1.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr13_C-40000-iced.matrix.gz 3.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr14_C-100000-iced.matrix.gz 1.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr14_C-40000-iced.matrix.gz 3.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr15_C-100000-iced.matrix.gz 1007.2 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr15_C-40000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr16_C-100000-iced.matrix.gz 852.2 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr16_C-40000-iced.matrix.gz 2.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr17_C-100000-iced.matrix.gz 944.6 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr17_C-40000-iced.matrix.gz 2.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr18_C-100000-iced.matrix.gz 800.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr18_C-40000-iced.matrix.gz 1.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr19_C-100000-iced.matrix.gz 496.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr19_C-40000-iced.matrix.gz 1.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr1_C-100000-iced.matrix.gz 5.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr1_C-40000-iced.matrix.gz 11.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr20_C-100000-iced.matrix.gz 635.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr20_C-40000-iced.matrix.gz 1.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr21_C-100000-iced.matrix.gz 225.7 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr21_C-40000-iced.matrix.gz 651.0 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr22_C-100000-iced.matrix.gz 188.5 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr22_C-40000-iced.matrix.gz 492.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr2_C-100000-iced.matrix.gz 7.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr2_C-40000-iced.matrix.gz 15.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr3_C-100000-iced.matrix.gz 5.6 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr3_C-40000-iced.matrix.gz 12.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr4_C-100000-iced.matrix.gz 4.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr4_C-40000-iced.matrix.gz 8.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr5_C-100000-iced.matrix.gz 4.5 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr5_C-40000-iced.matrix.gz 10.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr6_C-100000-iced.matrix.gz 3.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr6_C-40000-iced.matrix.gz 8.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr7_C-100000-iced.matrix.gz 3.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr7_C-40000-iced.matrix.gz 7.7 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr8_C-100000-iced.matrix.gz 3.0 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr8_C-40000-iced.matrix.gz 7.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr9_C-100000-iced.matrix.gz 1.8 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chr9_C-40000-iced.matrix.gz 4.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chrX_C-100000-iced.matrix.gz 2.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_chrX_C-40000-iced.matrix.gz 5.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-1000000-iced.matrix.gz 18.4 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr10_chr10_cis.matrix.gz 615.5 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr11_chr11_cis.matrix.gz 584.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr12_chr12_cis.matrix.gz 612.5 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr13_chr13_cis.matrix.gz 341.3 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr14_chr14_cis.matrix.gz 291.2 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr15_chr15_cis.matrix.gz 244.1 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr16_chr16_cis.matrix.gz 226.5 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr17_chr17_cis.matrix.gz 223.3 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr18_chr18_cis.matrix.gz 207.1 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr19_chr19_cis.matrix.gz 119.4 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr1_chr1_cis.matrix.gz 1.6 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr20_chr20_cis.matrix.gz 137.5 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr21_chr21_cis.matrix.gz 52.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr22_chr22_cis.matrix.gz 48.2 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr2_chr2_cis.matrix.gz 1.9 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr3_chr3_cis.matrix.gz 1.3 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr4_chr4_cis.matrix.gz 1.2 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr5_chr5_cis.matrix.gz 1.1 Mb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr6_chr6_cis.matrix.gz 975.9 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr7_chr7_cis.matrix.gz 852.1 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr8_chr8_cis.matrix.gz 718.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chr9_chr9_cis.matrix.gz 464.8 Kb (ftp)(http) MATRIX
GSE75070_HiCStein-MCF7-shRUNX1_hg19_genome_C-250000-iced_chrX_chrX_cis.matrix.gz 742.4 Kb (ftp)(http) MATRIX
GSE75070_MCF7_RUNX1_ChIPseq_peaks.bed.gz 40.3 Kb (ftp)(http) BED
GSE75070_MCF7_shNS_shRUNX1_genes_expression_expected_count.tsv.gz 543.5 Kb (ftp)(http) TSV
GSE75070_MCF7_shRUNX1_shNS_RNAseq_log2_foldchange.txt.gz 383.6 Kb (ftp)(http) TXT
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