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Series GSE73207 Query DataSets for GSE73207
Status Public on Nov 03, 2015
Title ChIP-Seq on Cohesin mutant TF-1 Cell Line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Understanding the binding of GATA2, RUNX1 and SMC3 in RAD21 WT vs. mutant TF-1 Cells
Overall design We examined GATA2, RUNX1 and SMC3 using ChIP-seq in TF-1 erythroleukemia cells that were transduced with an inducible vector expression WT or mutant (Q592*) RAD21 after 6 days of DOX induction
Contributor(s) Mazumdar C, Shen Y, Chang H, Majeti R
Citation(s) 26607380
Submission date Sep 18, 2015
Last update date May 15, 2019
Contact name Howard Chang
Organization name Stanford University
Street address 269 Campus Dr. Stanford, CA
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (15)
GSM1888542 rad21_wt_input_rep1
GSM1888543 rad21_wt_input_rep2
GSM1888544 rad21_mut_input_rep1
BioProject PRJNA296372
SRA SRP063863

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE73207_rad21_mut_gata2_merge_peaks.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSE73207_rad21_mut_runx1_merge_peaks.narrowPeak.gz 419.3 Kb (ftp)(http) NARROWPEAK
GSE73207_rad21_mut_smc3_merge_peaks.narrowPeak.gz 893.3 Kb (ftp)(http) NARROWPEAK
GSE73207_rad21_wt_gata2_merge_peaks.narrowPeak.gz 986.7 Kb (ftp)(http) NARROWPEAK
GSE73207_rad21_wt_runx1_merge_peaks.narrowPeak.gz 248.7 Kb (ftp)(http) NARROWPEAK
GSE73207_rad21_wt_smc3_merge_peaks.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
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Raw data are available in SRA
Processed data are available on Series record

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