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GEO accession:
Series GSE72856
Query DataSets for GSE72856
Status
Public on Feb 25, 2017
Title
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies
Organism
Mus musculus
Experiment type
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28225755
Submission date
Sep 09, 2015
Last update date
May 15, 2019
Contact name
Francesco Neri
E-mail(s)
francesco.neri@unito.it
Organization name
University of Torino
Street address
Via Nizza 52
City
Torino
State/province
Italy
ZIP/Postal code
10126
Country
Italy
Platforms (2)
GPL16173
Illumina HiScanSQ (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (78)
Less...
More...
GSM1873374
WGBS_ESC_WT
GSM1873375
WGBS_ESC_KO
GSM1873376
ART_seq_KO_rep1
GSM1873377
ART_seq_KO_rep2
GSM1873378
ART_seq_WT_rep1
GSM1873379
ART_seq_WT_rep2
GSM1873380
CAP_IgG_KO
GSM1873381
CAP_IgG_WT
GSM1873382
CAPIP_seq_KO_rep1
GSM1873383
CAPIP_seq_KO_rep2
GSM1873384
CAPIP_seq_WT_rep1
GSM1873385
CAPIP_seq_WT_rep2
GSM1873386
Input_CAPIP_KO
GSM1873387
Input_CAPIP_WT
GSM1873388
ChIP-seq Dnmt3b [WT]
GSM1873389
ChIP-seq Dnmt3b [Dnmt3b KO (cl. B126)]
GSM1873390
ChIP-seq IgG [WT]
GSM1873391
ChIP-seq IgG [Dnmt3b KO (cl. B126)]
GSM1873392
ChIP-seq H3K36me3 [WT]
GSM1873393
ChIP-seq H3K36me3 [Dnmt3b KO (cl. B126)]
GSM1873394
ChIP-seq RNA PolII [WT]
GSM1873395
ChIP-seq RNA PolII [Dnmt3b KO (cl. B126)]
GSM1873396
ChIP-seq RNA PolII DRB [WT]
GSM1873397
ChIP-seq RNA PolII DRB [Dnmt3b KO (cl. B126)]
GSM1873398
ChIP-seq Ser5 DRB [WT]
GSM1873399
ChIP-seq Ser5 DRB [Dnmt3b KO (cl. B126)]
GSM1873400
ChIP-seq Dnmt3b [shCtr]
GSM1873401
ChIP-seq Dnmt3b [shSetd2 #1]
GSM1873402
ChIP-seq Dnmt3b [shSetd2 #2]
GSM1873403
ChIP-seq H3K36me3 [shCtr]
GSM1873404
ChIP-seq H3K36me3 [shSetd2 #1]
GSM1873405
ChIP-seq H3K36me3 [shSetd2 #2]
GSM1873406
ChIP-seq Dnmt3b [Mock]
GSM1873407
ChIP-seq Dnmt3b [Dnmt3b-WT]
GSM1873408
ChIP-seq Dnmt3b [Dnmt3b-mut]
GSM2165937
ChIP-seq H3K4me3 [WT]
GSM2165938
ChIP-seq H3K4me3 [Dnmt3b KO (cl. B126)]
GSM2165939
ChIP-seq H3ac [WT]
GSM2165940
ChIP-seq H3ac [Dnmt3b KO (cl. B126)]
GSM2422491
RNAseq_total_ESC_KO_B77
GSM2422492
RNAseq_total_ESC_KO_Dnmt3b_V725G
GSM2422493
RNAseq_total_ESC_KO_Dnmt3b_wt
GSM2422494
RNAseq_total_ESC_KO_Dnmt3b_S277P
GSM2422495
RNAseq_total_ESC_KO_Dnmt3b_VWRR
GSM2422496
RNAseq_total_ESC_KO_Mock
GSM2422497
RNAseq_total_ESC_KO_rep1
GSM2422498
RNAseq_total_ESC_KO_rep2
GSM2422499
RNAseq_total_ESC_KO_shCTR
GSM2422500
RNAseq_total_ESC_KO_shSetd2_1
GSM2422501
RNAseq_total_ESC_KO_shSetd2_2
GSM2422502
RNAseq_total_ESC_WT_rep1
GSM2422503
RNAseq_total_ESC_WT_rep2
GSM2422504
RNAseq_total_ESC_WT_shCTR
GSM2422505
RNAseq_total_ESC_WT_shSetd2_1
GSM2422506
RNAseq_total_ESC_WT_shSetd2_2
GSM2422507
RNAseq_ESC_KO_DRB_0h
GSM2422508
RNAseq_ESC_KO_DRB_3h
GSM2422509
RNAseq_ESC_KO_DRB_6h
GSM2422510
RNAseq_ESC_KO_DRB_12h
GSM2422511
RNAseq_ESC_WT_DRB_0h
GSM2422512
RNAseq_ESC_WT_DRB_3h
GSM2422513
RNAseq_ESC_WT_DRB_6h
GSM2422514
RNAseq_ESC_WT_DRB_12h
GSM2422515
RNAseq_PolyA_ESC_B77
GSM2422516
RNAseq_PolyA_ESC_KO_rep1
GSM2422517
RNAseq_PolyA_ESC_KO_rep2
GSM2422518
RNAseq_PolyA_ESC_WT_rep1
GSM2422519
RNAseq_PolyA_ESC_WT_rep2
GSM2422532
DECAPseq_ESC_WT_rep1
GSM2422533
DECAPseq_ESC_WT_rep2
GSM2422534
DECAPseq_ESC_KO_rep1
GSM2422535
DECAPseq_ESC_KO_rep2
GSM2422536
DECAPseq_ESC_KO_shCTR
GSM2422537
DECAPseq_ESC_KO_shDis3_Rrp6
GSM2422538
DECAPseq_ESC_WT_shCTR
GSM2422539
DECAPseq_ESC_WT_shSetd2
GSM2422540
DECAPseq_ESC_KO_polyA
GSM2422541
DECAPseq_ESC_KO_cytosol
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE72850
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [BS-seq]
GSE72851
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [ART-seq]
GSE72852
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [CAPIP-seq]
GSE72853
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [ChIP-seq]
GSE72854
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [DECAP-seq]
GSE72855
Intragenic DNA methylation prevents cryptic transcription initiations on gene bodies [RNA-seq]
Relations
BioProject
PRJNA295202
Download family
Format
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File type/resource
GSE72856_RAW.tar
20.1 Gb
(http)
(custom)
TAR (of BED, BEDGRAPH)
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