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GEO accession:
Series GSE72087
Query DataSets for GSE72087
Status
Public on Dec 20, 2016
Title
Characterization of chromatin and gene expression changes during fasting in mouse liver
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28031249
Submission date
Aug 14, 2015
Last update date
Jul 25, 2021
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platforms (2)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (50)
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GSM1854432
fed CEBPb ChIP-seq rep#1
GSM1854433
fed CEBPb ChIP-seq rep#2
GSM1854434
fed CEBPb ChIP-seq rep#3
GSM1854435
fasted 24 hr CEBPb ChIP-seq rep#1
GSM1854436
fasted 24 hr CEBPb ChIP-seq rep#2
GSM1854437
fasted 24 hr CEBPb ChIP-seq rep#3
GSM1854438
fed H3K27ac ChIP-seq rep#1
GSM1854439
fed H3K27ac ChIP-seq rep#2
GSM1854440
fed H3K27ac ChIP-seq rep#3
GSM1854441
fasted 10 hrs H3K27ac ChIP-seq rep#1
GSM1854442
fasted 10 hrs H3K27ac ChIP-seq rep#2
GSM1854443
fasted 10 hrs H3K27ac ChIP-seq rep#3
GSM1854444
fasted 24 hrs H3K27ac ChIP-seq rep#1
GSM1854445
fasted 24 hrs H3K27ac ChIP-seq rep#2
GSM1854446
fasted 24 hrs H3K27ac ChIP-seq rep#3
GSM1854447
fed DHS-seq rep#1
GSM1854448
fed DHS-seq rep#2
GSM1854449
fed DHS-seq rep#3
GSM1854450
fasted 24h DHS-seq rep#1
GSM1854451
fasted 24h DHS-seq rep#2
GSM1854452
fasted 24h DHS-seq rep#3
GSM1854459
fed rep#1 RNA-seq
GSM1854460
fed rep#2 RNA-seq
GSM1854461
fed rep#3 RNA-seq
GSM1854462
fasted 24 hrs rep#1 RNA-seq
GSM1854463
fasted 24 hrs rep#2 RNA-seq
GSM1854464
fasted 24 hrs rep#3 RNA-seq
GSM1936962
fed GR ChIP-seq rep#1
GSM1936963
fed GR ChIP-seq rep#2
GSM1936964
fasted 24 hr GR ChIP-seq rep#1
GSM1936965
fasted 24 hr GR ChIP-seq rep#2
GSM2112340
NT - untreated CREB ChIP-seq
GSM2112341
glucagon (10nM), 1hr ChIP-seq rep#1
GSM2112342
glucagon (10nM), 1hr ChIP-seq rep#2
GSM2112343
glucagon (10nM) + corticosterone (1.7uM), 1hr ChIP-seq rep#1
GSM2112344
glucagon (10nM) + corticosterone (1.7uM), 1hr ChIP-seq rep#2
GSM2112345
glucagon (10nM) + corticosterone (1.7uM), 1hr GR ChIP-seq rep#1
GSM2112346
glucagon (10nM) + corticosterone (1.7uM), 1hr GR ChIP-seq rep#2
GSM2806543
Fed 24 hrs CREB ChIP-seq rep#1
GSM2806544
Fed 24 hrs CREB ChIP-seq rep#2
GSM2806545
Fed 24 hrs CREB ChIP-seq rep#3
GSM2806546
Fasted 24 hrs CREB ChIP-seq rep#1
GSM2806547
Fasted 24 hrs CREB ChIP-seq rep#2
GSM2806548
Fasted 24 hrs CREB ChIP-seq rep#3
GSM2806549
Fed 24 hrs pCREB ChIP-seq rep#1
GSM2806550
Fed 24 hrs pCREB ChIP-seq rep#2
GSM2806551
Fed 24 hrs pCREB ChIP-seq rep#3
GSM2806552
Fasted 24 hrs pCREB ChIP-seq rep#1
GSM2806553
Fasted 24 hrs pCREB ChIP-seq rep#2
GSM2806554
Fasted 24 hrs pCREB ChIP-seq rep#3
This SuperSeries is composed of the following SubSeries:
GSE72084
Characterization of chromatin and gene expression changes during fasting in mouse liver [ChIP-Seq]
GSE72085
Characterization of chromatin and gene expression changes during fasting in mouse liver [Dnase-Seq]
GSE72086
Characterization of chromatin and gene expression changes during fasting in mouse liver [RNA-Seq]
Relations
BioProject
PRJNA292909
Download family
Format
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE72087_RAW.tar
4.6 Gb
(http)
(custom)
TAR (of BEDGRAPH, CSV, FPKM_TRACKING)
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