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Series GSE71834 Query DataSets for GSE71834
Status Public on Feb 02, 2016
Title Quantification of RNA editing in MEF cells of different genetic backgrounds with and without interferon treatment
Organism Mus musculus
Experiment type Other
Summary We report the application of mmPCR-seq to mouse embryonic fibroblasts. We quantified RNA editing at 557 different loci using a microfluidic multiplex PCR method coupled with deep sequencing.
Overall design RT-PCR amplification of 557 loci from 6 MEF lines with and without interferon treatment to quantify RNA editing levels.
Contributor(s) Ramaswami G, Samuel C
Citation(s) 26817845
Submission date Aug 07, 2015
Last update date May 15, 2019
Contact name Gokul Ramaswami
Organization name Stanford University
Street address 300 Pasteur Drive Alway M305
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (24)
BioProject PRJNA292295
SRA SRP062161

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71834_RAW.tar 7.0 Mb (http)(custom) TAR (of TXT)
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Raw data are available in SRA
Processed data provided as supplementary file

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