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GEO accession:
Series GSE70868
Query DataSets for GSE70868
Status
Public on Jul 14, 2015
Title
The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26220994
Submission date
Jul 13, 2015
Last update date
May 15, 2019
Contact name
Peter Kharchenko
Organization name
Harvard Medical School
Department
DBMI
Lab
Kharchenko
Street address
10 Shattuck St.
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (75)
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More...
GSM1820915
Input_797_B4N_N
GSM1820916
Input_797_B4N_C
GSM1820917
IP_797_B4N_N
GSM1820918
IP_797_B4N_C
GSM1820919
Input_293T_B4N_N
GSM1820920
Input_293T_B4N_C
GSM1820921
IP_293T_B4N_N
GSM1820922
IP_293T_B4N_C
GSM1820923
Input_797_Rep1_Mar2014
GSM1820924
Input_797_Rep2_Mar2014
GSM1820925
IP_H3K27me3_797_Mar2014
GSM1820926
IP_Brd4_SaL_797_Rep1_Mar2014
GSM1820927
IP_Brd4_SaL_797_Rep2_Mar2014
GSM1820928
IP_Brd4_L_797_Rep1_Mar2014
GSM1820929
IP_Brd4_L_797_Rep2_Mar2014
GSM1820930
IP_Brd4_NUT_Rep1_Mar2014
GSM1820931
IP_Brd4_NUT_Rep2_Mar2014
GSM1820932
Input_797_Rep1_Jun2014
GSM1820933
Input_797_Rep2_Jun2014
GSM1820934
IP_H3K9ac_797_Rep1_Jun2014
GSM1820935
IP_H3K9ac_797_Rep2_Jun2014
GSM1820936
IP_H3K14ac_797_Rep1_Jun2014
GSM1820937
IP_H3K14ac_797_Rep2_Jun2014
GSM1820938
IP_H3K27ac_797_Rep1_Jun2014
GSM1820939
IP_H3K27ac_797_Rep2_Jun2014
GSM1820940
IP_H3K36me3_797_Rep1_Jun2014
GSM1820941
IP_H3K36me3_797_Rep2_Jun2014
GSM1820942
IP_P300_797_Rep1_Jun2014
GSM1820943
IP_P300_797_Rep2_Jun2014
GSM1820944
Input_797Trex_Jul2014
GSM1820945
Input_PT1015c_Jul2014
GSM1820946
Input_CL1015c_Jul2014
GSM1820947
Input_Per403_Jul2014
GSM1820948
Input_Brd3NUT_Jul2014
GSM1820949
IP_B4N_797Trex_Jul2014
GSM1820950
IP_B4N_PT1015c_Jul2014
GSM1820951
IP_B4N_CL1015c_Jul2014
GSM1820952
IP_B4N_Per403_Jul2014
GSM1820953
IP_B4N_Brd3NUT_Jul2014
GSM1820954
IP_H3K27ac_PT1015c_Oct2014
GSM1820955
IP_H3K27ac_CL1015c_Oct2014
GSM1820956
Input_JQ1_4h_797Trex_Oct2014
GSM1820957
IP_Brd4_SaL_JQ1_4h_797Trex_Oct2014
GSM1820958
IP_H3K27ac_JQ1_4h_797Trex_Oct2014
GSM1820959
IP_B4N_NUT_JQ1_4h_797Trex_Oct2014
GSM1820960
Input_293Trex_NoB4Nflag_Oct2014
GSM1820961
IP_Brd4_SaL_293Trex_NoB4Nflag_Oct2014
GSM1820962
IP_H3K27Ac_293Trex_NoB4Nflag_Oct2014
GSM1820963
IP_B4N_NUT_293Trex_NoB4Nflag_Oct2014
GSM1820964
Input_293Trex_2hB4Nflag_Oct2014
GSM1820965
IP_Brd4_SaL_293Trex_2hB4Nflag_Oct2014
GSM1820966
IP_H3K27Ac_293Trex_2hB4Nflag_Oct2014
GSM1820967
IP_B4N_NUT_293Trex_2hB4Nflag_Oct2014
GSM1820968
Input_293Trex_7hB4Nflag_Oct2014
GSM1820969
IP_Brd4_SaL_293Trex_7hB4Nflag_Oct2014
GSM1820970
IP_H3K27Ac_293Trex_7hB4Nflag_Oct2014
GSM1820971
IP_B4N_NUT_293Trex_7hB4Nflag_Oct2014
GSM1820972
Input_293Trex_3hB4Nflag_Dec2014
GSM1820973
IP_Brd4_SaL_293Trex_3hB4Nflag_Dec2014
GSM1820974
IP_B4N_NUT_293Trex_3hB4Nflag_Dec2014
GSM1820975
IP_H3K27Ac_293Trex_3hB4Nflag_Dec2014
GSM1820976
No_JQ1_797R1
GSM1820977
1h_JQ1_797R1
GSM1820978
2h30_JQ1_797R1
GSM1820979
4h_JQ1_797R1
GSM1820980
No_JQ1_797R2
GSM1820981
1h_JQ1_797R2
GSM1820982
2h30_JQ1_797R2
GSM1820983
4h_JQ1_797R2
GSM1820984
noTET_293TB4Nf
GSM1820985
2hTET_293TB4Nf
GSM1820986
3hTET_293TB4Nf
GSM1820987
7hTET_293TB4Nf
GSM1820988
No_JO1_1015C
GSM1820989
4h_JO1_1015C
This SuperSeries is composed of the following SubSeries:
GSE70869
Chip-seq BRD4NUT-BioTAP mapping in 293Trex and 797 cells
GSE70870
Chip-seq mapping of active chromatin marks in BRD4-NUT and different NMC cells
GSE70871
Recovery and analysis of nascent RNA
Relations
BioProject
PRJNA289737
Download family
Format
SOFT formatted family file(s)
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE70868_RAW.tar
15.7 Gb
(http)
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TAR (of TDF)
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