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GEO accession:
Series GSE70804
Query DataSets for GSE70804
Status
Public on Apr 21, 2016
Title
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment
Organism
Homo sapiens
Experiment type
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27058758
Submission date
Jul 11, 2015
Last update date
May 15, 2019
Contact name
Sekyung Oh
E-mail(s)
ohskjhmi@gmail.com
Phone
650-725-3354
Organization name
Stanford University School of Medicine
Department
Neurology and Neurological Sciences
Street address
1201 Welch Road, MSLS P224
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (32)
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GSM1819209
DDX3 R534H Ars iCLIP rep1
GSM1819210
DDX3 R534H Ars iCLIP rep2
GSM1819211
DDX3 R534H iCLIP rep1
GSM1819212
DDX3 R534H iCLIP rep2
GSM1819213
DDX3 WT Ars iCLIP rep1
GSM1819214
DDX3 WT Ars iCLIP rep2
GSM1819215
DDX3 WT iCLIP rep1
GSM1819216
DDX3 WT iCLIP rep2
GSM1819217
Rluc control ribosome profiling rep1
GSM1819218
DDX3 WT ribosome profiling rep1
GSM1819219
DDX3 R534H ribosome profiling rep1
GSM1819220
Rluc control ribosome profiling with sodium arsenite rep1
GSM1819221
DDX3 WT ribosome profiling with sodium arsenite rep1
GSM1819222
DDX3 R534H ribosome profiling with sodium arsenite rep1
GSM1819223
Rluc control ribosome profiling rep2
GSM1819224
DDX3 WT ribosome profiling rep2
GSM1819225
DDX3 R534H ribosome profiling rep2
GSM1819226
Rluc control ribosome profiling with sodium arsenite rep2
GSM1819227
DDX3 WT ribosome profiling with sodium arsenite rep2
GSM1819228
DDX3 R534H ribosome profiling with sodium arsenite rep2
GSM1819229
Rluc control total RNA-seq rep1
GSM1819230
DDX3 WT total RNA-seq rep1
GSM1819231
DDX3 R534H total RNA-seq rep1
GSM1819232
Rluc control total RNA-seq with sodium arsenite rep1
GSM1819233
DDX3 WT total RNA-seq with sodium arsenite rep1
GSM1819234
DDX3 R534H total RNA-seq with sodium arsenite rep1
GSM1819235
Rluc control total RNA-seq rep2
GSM1819236
DDX3 WT total RNA-seq rep2
GSM1819237
DDX3 R534H total RNA-seq rep2
GSM1819238
Rluc control total RNA-seq with sodium arsenite rep2
GSM1819239
DDX3 WT total RNA-seq with sodium arsenite rep2
GSM1819240
DDX3 R534H total RNA-seq with sodium arsenite rep2
This SuperSeries is composed of the following SubSeries:
GSE70801
Profile of RNAs bound by wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [iCLIP-Seq]
GSE70802
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq]
GSE70803
Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq]
Relations
BioProject
PRJNA289567
Download family
Format
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Series Matrix File(s)
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Supplementary file
Size
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File type/resource
GSE70804_RAW.tar
1.4 Gb
(http)
(custom)
TAR (of BW)
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