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Series GSE70803 Query DataSets for GSE70803
Status Public on Apr 21, 2016
Title Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA expression profiles are not significantly altered by DDX3 WT or R534H expression as well as by 45 minute exposure of cells to sodium arsenite.
Overall design Cells expressing either DDX3 WT or R534H variant were treated with or without sodium arsenite and lysed in the presence of cyclohexime. Total cellular RNAs were extracted and sequenced.
Contributor(s) Oh S, Cho Y
Citation(s) 27058758
Submission date Jul 11, 2015
Last update date May 15, 2019
Contact name Sekyung Oh
Phone 650-725-3354
Organization name Stanford University School of Medicine
Department Neurology and Neurological Sciences
Street address 1201 Welch Road, MSLS P224
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (12)
GSM1819229 Rluc control total RNA-seq rep1
GSM1819230 DDX3 WT total RNA-seq rep1
GSM1819231 DDX3 R534H total RNA-seq rep1
This SubSeries is part of SuperSeries:
GSE70804 Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment
BioProject PRJNA289568
SRA SRP060677

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70803_RAW.tar 1.1 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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