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Series GSE70653 Query DataSets for GSE70653
Status Public on Mar 03, 2016
Title Affymetrix Genome-Wide Human SNP Array 6.0 data for Type II Enteropathy-associated T-cell lymphoma
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary Type II Enteropathy-associated T-cell lymphoma (Type II EATL) is an aggressive intestinal T-cell lymphoma with poor prognosis and has not been molecularly profiled. Through targeted amplicon sequencing, we identified a large portion of Type II EATL samples that harbor mutations in the STAT5B, JAK3 and GNAI2 genes. Genome-wide DNA copy number profiling of Type II EATL tumors and matched normal samples was performed to determine copy-number changes in this disease.
Overall design Affymetrix SNP6 arrays were performed according to the manufacturer's directions on gDNA extracted from 4 tumors and 4 matched whole blood samples.
Contributor(s) Nagarajan S, Nairism├Ągi ML, Ong CK
Citation(s) 26854024
Submission date Jul 08, 2015
Last update date Nov 27, 2018
Contact name Sanjanaa Nagarajan
Organization name National Cancer Centre Singapore
Department Department of Medical Sciences
Lab NCCS-VARI Translational Research Laboratory
Street address 11 Hospital Drive
City Singapore
State/province Singapore
ZIP/Postal code 169610
Country Singapore
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (8)
GSM1815835 N013
GSM1815836 T013
GSM1815837 N063
This SubSeries is part of SuperSeries:
GSE70654 Type II Enteropathy-associated T-cell lymphoma
BioProject PRJNA289280

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70653_RAW.tar 232.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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