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Series GSE70621 Query DataSets for GSE70621
Status Public on May 17, 2017
Title Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis.
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Using 1 melanocyte and 6 melanoma cell line (3 pair of primary and metastatic), we generated base-resolution DNA methylation maps to document DNA methylation drivers of melanoma metastasis.
Overall design Here we generated single-nucleotide resoultion DNA methylation map of a total of 7 cell lines using Reduced Representation Bisulfite Sequencing (RRBS)
Contributor(s) Chatterjee A, Stockwell PA, Eccles MR, Ahn A, Rodger EJ
Citation(s) 28030832
Submission date Jul 08, 2015
Last update date May 15, 2019
Contact name Aniruddha Chatterjee
Phone +64-210701558
Organization name University of Otago
Department Pathology
Lab Epigenetics and Disease
Street address 270 Great king Street
City Dunedin
State/province Otago
ZIP/Postal code 9054
Country New Zealand
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (7)
GSM1812004 Mel-ST (melanocyte cell line)
GSM1812005 WM-155 (primary cell line)
GSM1812006 WM-266-4 cell line (metastatic cell line)
BioProject PRJNA289192
SRA SRP060500

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70621_RAW.tar 61.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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