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Series GSE70462 Query DataSets for GSE70462
Status Public on Feb 05, 2016
Title Identifying DEK-dependent transcriptional signatures in HPV+ and HPV- head and neck squamous cell carcinoma (HNSCC)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the first RNA-Seq experiments profiling the effects of DEK loss in HNSCC. Our data also incorporates HPV+ and HPV- tumors to idenfity HPV-dependent and -independent gene signatures.
Overall design RNA-Seq of DEK-dependent gene signatures in HNSCC cell lines
Contributor(s) Adams A, Wells S
Citation(s) 26527316
Submission date Jul 01, 2015
Last update date May 15, 2019
Contact name Susanne Wells
Organization name Cincinnati Children's Hospital Medical Center
Street address 3333 Burnet Ave.
City Cincinnati
State/province Ohio
ZIP/Postal code 45229
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM1755404 UMSCC1 NTsh
GSM1755405 UMSCC1 DEKsh
GSM1755406 UMSCC47 NTsh
BioProject PRJNA288722
SRA SRP060234

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70462_UMSCC1GSdata.txt.gz 1.4 Mb (ftp)(http) TXT
GSE70462_UMSCC47GSdata.txt.gz 1.4 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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