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Series GSE70268 Query DataSets for GSE70268
Status Public on Jun 25, 2018
Title RNA-seq of cytosolic and chromatin-associated transcripts following TNFα and Spt5 KD
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We examined the effects of TNFα and Spt5, the major DSIF subunit, on nascent and mature transcripts using RNA-Seq of chromatin-associated and cytoplasmic transcripts.
Overall design RNA was extracted from the cytosolic and chromatin fractions of control and Spt5 KD cells that were treated with TNFα for 1 hour
Contributor(s) Diamant G, Dikstein R
Citation(s) 26903558
Submission date Jun 25, 2015
Last update date May 15, 2019
Contact name Rivka Dikstein
Organization name The Weizmann Institute of Science
Street address 2 Hertzl st.
City Rehovot
ZIP/Postal code 76100
Country Israel
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM1722193 Cytosolic control
GSM1722194 Cytosolic TNFα
GSM1722195 Cytosolic Spt5 KD control
BioProject PRJNA288134
SRA SRP059880

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70268_gene_counts.xlsx 2.9 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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