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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 15, 2016 |
| Title |
Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in Glioblastoma stem-like cells |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
To identify new therapeutic targets for Glioblastoma (GBM), we performed genome-wide CRISPR-Cas9 "knockout" (KO) screens in patient-derived GBM stem-like cells (GSCs) and human neural stem/progenitors (NSCs), non-neoplastic stem cell controls, for genes required for their in vitro growth. Surprisingly, the vast majority GSC-lethal hits were found outside of molecular networks commonly altered in GBM and GSCs (e.g., oncogenic drivers). In vitro and in vivo validation of GSC-specific targets revealed several strong hits, including the wee1-like kinase, PKMYT1/Myt1. Mechanistic studies demonstrated that PKMYT1 acts redundantly with WEE1 to inhibit Cyclin B-CDK1 activity via CDK1-Tyr15 phosphorylation and to promote timely completion of mitosis in NSCs. However, in GSCs, this redundancy is lost, likely as a result of oncogenic signaling, causing GBM-specific lethality.
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| Overall design |
A whole-genome CRISPR-Cas9 knockout screens targeting over 18,000 genes using the all-in-one LV-sgRNA:Cas9 platform system were performed using a “shot gun” approach by transducing 2 GBM patient-derived isolates and 2 human neural stem cell isolates with the pool library (2 biological replicates), and cultures were outgrown for ~3 weeks. The end time point of each screen was compared to day 0 in order to determine which sgRNAs were overrepresented or underrepresented in the population.
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| Contributor(s) |
Toledo CM, Ding Y, Basom R, Delrow JJ, Olson JM, Paddison PJ |
| Citation(s) |
26673326 |
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| Submission date |
Jun 19, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Patrick Paddison |
| E-mail(s) |
paddison@fhcrc.org
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| Phone |
206-667-4474
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| Organization name |
Fred Hutchinson Cancer Research Center
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| Street address |
1100 Fairview Ave N, C3-187
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA287526 |
| SRA |
SRP059683 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70038_rawReadCounts.txt.gz |
3.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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