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Series GSE69709 Query DataSets for GSE69709
Status Public on May 26, 2016
Title RNAseq in E18.5 wild-type, Nova2-KO, and Nova1-KO mouse cortex and mid- and hind-brain
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from E18.5 mouse cortex (3 wild-type vs 3 Nova2-/- and 3 wild-type vs 3 Nova1-/-) and from E18.5 mouse mid- and hind-brain (3 wild-type vs 3 Nova1-/-) to compare gene expression level and alternative splicing events between wild-type and Nova mutant mice.
Overall design Mouse cortex or mid- and hind-brain mRNA profiles of embryonic 18.5 day wild type (WT), Nova2-/-, and Nova1-/- mice were generated by deep sequencing using Illumina Hiseq2500.
Contributor(s) Saito Y, Darnell RB
Citation(s) 27223325
Submission date Jun 09, 2015
Last update date May 15, 2019
Contact name Yuhki Saito
Organization name The Rockefeller University
Lab Laboratory of Molecular Neuro-oncology
Street address 1230 York avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (18)
GSM2154666 RNAseq_WT1_cortex
GSM2154667 RNAseq_WT2_cortex
GSM2154668 RNAseq_WT3_cortex
This SubSeries is part of SuperSeries:
GSE69711 Nova HITS-CLIP and RNA-Seq in mouse cortex
BioProject PRJNA286236
SRA SRP059295

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69709_RNAseq_ASevents.Nova2ko.mm9.txt.gz 104.0 Kb (ftp)(http) TXT
GSE69709_RNAseq_abundance.txt.gz 1008.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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