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Series GSE69420 Query DataSets for GSE69420
Status Public on May 23, 2016
Title Finding missing proteins from epigenetically manipulated human cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed transcriptome sequencing to assess the genes turn on in the cell under epigenetically manipulation. MHCC97H, A549 and HCT116 were treated by GSK126, S2101 and TSA respectively. We detected the missing proteins in the cells under epigenetically manipulation.
Overall design A549 and MHCC97H cells were cultured in the complete DMEM medium and epigenetically manipulation (1 μM TSA, 50 μM GSK126 and 100μM S2101 respectively); HCT116 cells were maintained in complete RPMI 1640 medium and epigenetically manipulation (1 μM TSA, 50 μM GSK126 and 100μM S2101 respectively). We detected and analyzed the missing protein with transcriptome and proteome.
Contributor(s) Lian X, Zhang G
Citation(s) 26202631
Submission date Jun 01, 2015
Last update date May 15, 2019
Contact name Gong Zhang
Organization name Jinan University
Department Institute of Life and Health Engineering
Lab Translatomics Lab
Street address Huang-Pu Avenue West 601
City Guangzhou
ZIP/Postal code 510632
Country China
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (12)
GSM1700940 MHCC97H Normal condition
GSM1700941 MHCC97H was treated by GSK126
GSM1700942 MHCC97H was treated by S2101
BioProject PRJNA285466
SRA SRP058916

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69420_RAW.tar 5.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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