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Series GSE68864 Query DataSets for GSE68864
Status Public on Jun 25, 2015
Title ATF4 Licenses C/EBPb Activity in Human Mesenchymal Stem Cells Primed for Adipogenesis
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report ChIP-seq for C/EBPb and ATF4 in human mesenchymal stem cells and in a cell-free system using naked genomic DNA. ChIP-Seq for GR, RNA Polymerase II, and H3K27 acetylation in hMSCs cultured under different adipogenic conditions are also presented.
Overall design hMSCs cultured at high or low cell seeding densities in the presence or absence of adipogenic induction cocktail
Contributor(s) Cohen D, Steger D
Citation(s) 26111340
Submission date May 14, 2015
Last update date May 15, 2019
Contact name David J Steger
Organization name University of Pennsylvania
Department Institute of Diabetes, Obesity, and Metabolism
Lab Steger
Street address 12-193 SCTR 3400 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
Platforms (3)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (22)
GSM1684630 ChIP-seq, RNAPII_LowDensity_noDMI
GSM1684631 ChIP-seq, RNAPII_HighDensity_noDMI
GSM1684632 ChIP-seq, RNAPII_LowDensity_DMI
BioProject PRJNA283934
SRA SRP058336

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68864_RAW.tar 445.0 Mb (http)(custom) TAR (of BED, BEDGRAPH)
GSE68864_RNAPII.peaks.bed.gz 1.1 Mb (ftp)(http) BED
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Raw data are available in SRA
Processed data provided as supplementary file

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