|
| Status |
Public on Dec 16, 2015 |
| Title |
A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies |
| Organisms |
Branchiostoma lanceolatum; Danio rerio |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Comparison among vertebrates and the cephalochordate amphioxus Hox clusters architectures
|
| |
|
| Overall design |
4C-seq experiments from promoters spanning the amphioxus Hox cluster and the zebrafish hoxd cluster and surrounnding areas,
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| |
|
| Contributor(s) |
Acemel RD, Tena JJ, Irastorza I, Marlétaz F, Gómez-Marín C, de la Calle-Mustienes E, Bertrand S, Diaz SG, Holland PW, Devos DP, Maeso I, Escrivá H, Gómez-Skarmeta JL |
| Citation(s) |
26829752 |
| |
| Submission date |
May 11, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Juan J. Tena |
| E-mail(s) |
jjtenagu@upo.es
|
| Organization name |
CABD/CSIC
|
| Street address |
Univ. Pablo Olavide, Ctra. Utrera km1
|
| City |
Sevilla |
| ZIP/Postal code |
41013 |
| Country |
Spain |
| |
|
| Platforms (2) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
| GPL20177 |
Illumina HiSeq 2000 (Branchiostoma lanceolatum) |
|
| Samples (74)
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| Relations |
| SRA |
SRP058187 |
| BioProject |
PRJNA283542 |
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