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Series GSE68727 Query DataSets for GSE68727
Status Public on Jul 31, 2015
Title Vitamin D receptor (VDR) regulates epidermal stem cells and cutanous wound healing [VDR KO]
Organism Mus musculus
Experiment type Expression profiling by array
Summary The vitamin D receptor (VDR) regulates cell proliferation and differentiation including epidermal keratinocytes by modulating transcription of its target genes. We are investigating the role of VDR in epidermal stem cells and their progenies in the regeneration process of epidermis and hair in the skin. VDR null mice are utilized in which VDR is specifically deleted in keratin 14 (K14) expressing keratinocytes by Cre-lox strategy. The impact of VDR deletion was evaluated by comparison of VDR null mice with no cre littermate control mice. The VDR was abundantly expressed in potential epidermal stem cells including basal cells in interfollicular epidermis (IFE), and in CD34 expressing bulge keratinocytes in hair follicles. Gene expression profiles and subsequent pathway analysis of stem cell enriched keratinocyte populations revealed that the VDR deletion significantly suppressed β-catenin signaling as well as VDR signaling. The role of VDR in epidermal stem cells was studied during hair follicle cycling and wound healing processes. The epidermal stem cells were not appropriately stimulated by hair depilation, and did not reinitiate anagen in the hair follicles resulting in a failure of hair regrowth. In addition, the stem cells were not fully activated after full thickness wounds were generated in VDR null skin under a low calcium diet to suppress compensation pathways. Cell proliferation was not fully induced in potential stem cells located in both IFE and hair follicles near the wounding edges, and re-epithelialization rate was delayed in VDR null skin. Gene expression profiling of the wounded skin (3 days after injury) indicated that β-catenin signaling was not fully induced in VDR null skin comparable to that observed in β-catenin null mice. The β-catenin target genes including Axin2 and cell cycle regulators involved in epidermal stem cell function were not induced in the edges of the wound of VDR null skin. These results demonstrated that VDR plays an essential role in hair cycling and wound healing processes through regulation of β-catenin signaling in epidermal stem cells and their progenies.
 
Overall design n=3 CON and KO (each sample contain RNA isolated from wounded or nonwounded skins excised from 3 mice)
 
Contributor(s) Oda Y, Nguyen T, Bikle DD
Citation(s) 26282157, 37330071
Submission date May 11, 2015
Last update date Jan 03, 2025
Contact name Yuko Oda
E-mail(s) yuko.oda@ucsf.edu
Phone 4152692370
Organization name VA Medical Center UCSF
Department Endocrine Research
Street address 111N-MB 360 1700 Owens St, Suite 360
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL6885 Illumina MouseRef-8 v2.0 expression beadchip
Samples (2)
GSM1679834 VDR Control (CON) wounded skin
GSM1679835 VDR knockout (KO) wounded skin
This SubSeries is part of SuperSeries:
GSE68730 Vitamin D receptor (VDR) regulates epidermal stem cells and cutanous wound healing
Relations
BioProject PRJNA283523

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68727_Non-normalized_data.txt.gz 1020.0 Kb (ftp)(http) TXT
GSE68727_Normalized_data_with_annotation.txt.gz 1.0 Mb (ftp)(http) TXT
GSE68727_RAW.tar 5.0 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table
Processed data are available on Series record

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