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Series GSE68472 Query DataSets for GSE68472
Status Public on Jun 11, 2015
Title Transcriptional profile of XBP1-deficient ovarian cancer-associated dendritic cells (DCs)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary ID8-based ovarian tumors were developed for 3 weeks in wild type (WT, N=3) or conditional knockout mice selectively deleting XBP1 in CD11c positive cells (KO, N=3). Tumor-associated DCs were independently sorted via FACS and used for transcriptional profiling.
Overall design Total RNA from sorted tumor-associated DCs (N=3/genotype) was independently isolated using the miRVANA kit (Life Technologies) and further purified and concentrated using minElute columns (Qiagen). RNA integrity was confirmed using an Agilent Bioanalyzer 2100.
Contributor(s) Cubillos-Ruiz JR, Glimcher LH
Citation(s) 26073941
Submission date May 01, 2015
Last update date May 15, 2019
Contact name Juan R Cubillos-Ruiz
Organization name Weill Cornell Medicine
Department Medicine
Street address 1300 York Ave, E-907
City New York
State/province NY
ZIP/Postal code 10065
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM1673360 WT rep 1
GSM1673361 WT rep 2
GSM1673362 WT rep 3
BioProject PRJNA282806
SRA SRP057879

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Supplementary file Size Download File type/resource
GSE68472_NormalizedMatrix_GeneLevel.csv.gz 647.6 Kb (ftp)(http) CSV
GSE68472_non_normalized_Rawcounts_GeneLevel.txt.gz 292.1 Kb (ftp)(http) TXT
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Processed data are available on Series record

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