GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE68452 Query DataSets for GSE68452
Status Public on May 19, 2015
Title Role of cervicovaginal microbiota in genital inflammation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed gene expression analysis using the SCRB-Seq method from cervical and peripheral blood antigen presenting cells that were collected from women with different cervicovaginal bacterial community types.
Overall design Cervical and peripheral blood antigen presenting cells were FACS sorted using the gating strategy: FSC vs. SSC -> Singlets -> Live CD45+ -> HLA-DR+ -> CD11c+ or CD14+. The genital bacterial microbiomes were characterized in the same women and categorized into Lactobacillus dominance, Gardnerella dominance, or Prevotella dominance.
Contributor(s) Anahtar MN, Soumillon M
Citation(s) 25992865
Submission date Apr 30, 2015
Last update date May 15, 2019
Contact name Melis Anahtar
Organization name Massachusetts General Hospital
Department Ragon Institute of MGH, MIT, Harvard
Lab Kwon Lab
Street address 400 Technology Sq
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (32)
GSM1671924 Subject1_Cervical
GSM1671925 Subject2_Cervical
GSM1671926 Subject3_Cervical
BioProject PRJNA282757
SRA SRP057852

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68452_DGE_results_23Apr2015_coded.txt.gz 240.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap